DNAseqtest-package      Generating and Testing DNA Sequences
Distance                Paralinear Distances
Fmatrix                 Joint Distribution for Two Matched Sequences
Ntml                    Generating Samples from a Multinomial
                        Distribution
Pt                      Transition Probability Function
Smatrix                 Symmetric Matrix S
TEST2                   Test for Symmetry of Matched DNA Sequences
TEST3                   Overall Test for Marginal Symmetry
artomat                 Transforming 4^K Array to m \times K Matrix
gn                      Joint Distribution for K Matched Sequences
gn2                     Joint Distribution for K Matched Sequences (2)
gn3sim                  Generating Random DNA Samples Using the Rambaut
                        and Grassly Method
likelihood              Negative Log Likelihood Ratio
simapp                  Generating Random DNA Samples Using
                        Approximation Method
simemb                  Generating Random DNA Samples Using Embedded
                        Markov Chain
