CheckContrast           Check and reformat the matrix of contrast
CheckIncidence          Check and reformat the matrix of incidence
ContrastStatTest        Compute the statistic of the contrast test.
ContrastStatTest.NA     Compute the statistic of the contrast test in
                        presence of missing values
FastKerFdr              FastKerFdr
GetH0Items              GetH0Items
LLikelihoodT_vect       LLikelihoodT_vect
MakeQQplot              Drawing a QQplot
ReadData                ReadData
RegressionStatTest      Compute the pvalue of the meta-regression test.
RegressionStatTestNA    Compute the pvalue of the regression test in
                        presence of missing values.
autocor                 Computation of the autocorrelation
envDesc                 Description of the environments.
lindley                 Computation of the lindley process from scores.
metaData                Results of different GWAS.
metaGE.collect          Collect the results of GWAS data from different
                        files
metaGE.cor              Infer inter-environment correlation matrix
metaGE.fit              Meta-analysis procedure: Fixed or Random
                        effect.
metaGE.heatmap          Draw the heatmap to see markers effects across
                        environments.
metaGE.incidence        Create the matrix of incidence.
metaGE.lscore           Compute the local score from a set of pvalues.
metaGE.manhattan        Draw the Manhattan plot.
metaGE.pvalplot         Display visual checks of pvalues.
metaGE.regplot          Plot the z-score of a marker according to a
                        covariate.
metaGE.test             Meta-analysis test for Genotype x Environment
                        interactions: Contrast or Regression.
sig_sl                  Computation of the significative regions
thresUnif               Computation of the significance threshold
