Image Processing Tools for Barnes Maze Experiments

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Documentation for package ‘BioTrajectory’ version 1.1.0

• DESCRIPTION file.
• Package NEWS.

Help Pages

as.trajectory	Convert to Trajectory Object
centroid	Calculate the Centroid of Object
detectBarnes	Detect Circles in a Maze Image
distanceToTarget	Calculates distances to a target point
distanceTraveled	Calculates the total distance traveled through a series of points.
getRadius	Estimate the Radius of a Circle Fitting Four Points
getTrajectory	Get Object Trajectory from Image Sequence
heatmapFromTrajectory	Creates a heatmap from a trajectory.
interpolateTrajectory	Interpolates a trajectory
is.trajectory	Check if Object is a Trajectory
isClosed	Check if the first and last points of a "trajectory" object are within a given tolerance
length.trajectory	Length of the Trajectory
nearestTarget	Finds the nearest targets to a set of points within a specified radius.
normalVectors	Calculate the normals from tangents of a trajectory object
or	Combine Two Trajectories
plot.trajectory	Plot the Trajectory
print.summary.trajectory	Print Summary of the Trajectory
readImage	Read and Resize an Image
readtrackData	Reads tracking data from a specified file.
reverseTrajectory	Reverse the points of a trajectory object and create a new trajectory
selFrame	Image Frame Selector and Viewer
showDistanceToTarget	Visualizes the distance to the target in a plot.
smoothTrajectory	Apply a moving average filter to the trajectory and create a smoothed trajectory
subsampleTrajectory	Subsample the points of a trajectory object and create a new trajectory
summary.trajectory	Summary of the Trajectory
tangentVectors	Calculate the tangent cectors of a trajectory object
trajectory	Trajectory Class
trimTrajectory	Trim a trajectory object to a subset of points
videoToFrames	Extract Frames from a Video and Save as Images
|.trajectory	Combine Two Trajectories