HEMDAG-package	HEMDAG-package
adj.upper.tri	adj.upper.tri
auprc	auprc
auprc.single.class	auprc
auprc.single.over.classes	auprc
auroc	auroc
auroc.single.class	auroc
auroc.single.over.classes	auroc
build.ancestors	build.ancestors
build.ancestors.bottom.up	build.ancestors
build.ancestors.per.level	build.ancestors
build.children	build.children
build.children.bottom.up	build.children
build.children.top.down	build.children
build.consistent.graph	build.consistent.graph
build.descendants	build.descendants
build.descendants.bottom.up	build.descendants
build.descendants.per.level	build.descendants
build.edges.from.hpo.obo	build.edges.from.hpo.obo
build.parents	build.parents
build.parents.bottom.up	build.parents
build.parents.top.down	build.parents
build.parents.topological.sorting	build.parents
build.scores.matrix	build.scores.matrix
build.scores.matrix.from.list	build.scores.matrix
build.scores.matrix.from.tupla	build.scores.matrix
build.subgraph	build.subgraph
build.submatrix	build.submatrix
check.annotation.matrix.integrity	check.annotation.matrix.integrity
check.dag.integrity	check.dag.integrity
check.hierarchy	hierarchical.checkers
check.hierarchy.single.sample	hierarchical.checkers
compute.flipped.graph	compute.flipped.graph
compute.fmax	fmax
constraints.matrix	constraints.matrix
create.stratified.fold.df	create.stratified.fold.df
distances.from.leaves	distances.from.leaves
example.datasets	example.datasets
F.measure.multilabel	multilabel.F.measure
F.measure.multilabel,matrix,matrix-method	multilabel.F.measure
find.best.f	find.best.f
find.leaves	find.leaves
fmax	fmax
full.annotation.matrix	full.annotation.matrix
g	example.datasets
gpav	gpav
gpav.holdout	gpav.holdout
gpav.over.examples	gpav.over.examples
gpav.parallel	gpav.parallel
gpav.vanilla	gpav.vanilla
graph.levels	graph.levels
HEMDAG	HEMDAG-package
hierarchical.checkers	hierarchical.checkers
htd	htd
htd.holdout	htd.holdout
htd.vanilla	htd.vanilla
L	example.datasets
lexicographical.topological.sort	lexicographical.topological.sort
multilabel.F.measure	multilabel.F.measure
normalize.max	normalize.max
obozinski.and	obozinski.heuristic.methods
obozinski.heuristic.methods	obozinski.heuristic.methods
obozinski.holdout	obozinski.holdout
obozinski.max	obozinski.heuristic.methods
obozinski.methods	obozinski.methods
obozinski.or	obozinski.heuristic.methods
precision.at.all.recall.levels.single.class	pxr
precision.at.given.recall.levels.over.classes	pxr
pxr	pxr
read.graph	read.graph
read.undirected.graph	read.undirected.graph
root.node	root.node
S	example.datasets
scores.normalization	scores.normalization
specific.annotation.list	specific.annotation.list
specific.annotation.matrix	specific.annotation.matrix
stratified.cross.validation	stratified.cross.validation
stratified.cv.data.over.classes	stratified.cross.validation
stratified.cv.data.single.class	stratified.cross.validation
test.index	example.datasets
tpr.dag	tpr.dag
tpr.dag.cv	tpr.dag.cv
tpr.dag.holdout	tpr.dag.holdout
transitive.closure.annotations	transitive.closure.annotations
tupla.matrix	tupla.matrix
unstratified.cv.data	unstratified.cv.data
W	example.datasets
weighted.adjacency.matrix	weighted.adjacency.matrix
write.graph	write.graph
