Package: nodeSub
Type: Package
Title: Simulate DNA Alignments Using Node Substitutions
Version: 1.2.3
Author: Thijs Janzen
Maintainer: Thijs Janzen <thijsjanzen@gmail.com>
Description: Simulate DNA sequences for the node substitution model.
    In the node substitution model, substitutions accumulate additionally 
    during a speciation event, providing a potential mechanistic explanation for 
    substitution rate variation. This package provides tools to simulate
    such a process, simulate a reference process with only substitutions along
    the branches, and provides tools to infer phylogenies from alignments. More
    information can be found in Janzen (2021) <doi:10.1093/sysbio/syab085>.
URL: https://github.com/thijsjanzen/nodeSub
BugReports: https://github.com/thijsjanzen/nodeSub
License: GPL-3
Encoding: UTF-8
RoxygenNote: 7.1.1
VignetteBuilder: knitr
LinkingTo: Rcpp
Depends: Rcpp
Imports: RPANDA, nLTT, apTreeshape, phangorn, tibble, DDD, Rmpfr,
        assertthat, pbapply, phylobase, geiger, ape, babette, beautier,
        beastier, mauricer, tracerer, rappdirs, testit, stringr
Suggests: phytools, testthat, TreeSim, dplyr, knitr, rmarkdown,
        ggplot2, magrittr, tidyr
NeedsCompilation: yes
Packaged: 2022-01-31 10:06:57 UTC; janzen
Repository: CRAN
Date/Publication: 2022-02-01 07:50:10 UTC
Built: R 4.0.5; x86_64-apple-darwin17.0; 2022-02-02 12:22:26 UTC; unix
Archs: nodeSub.so.dSYM
