P_sojae_survey          _Phytophthora sojae_ survey example data
autoplot.hagis.complexities
                        Plot hagis complexities objects
autoplot.hagis.gene.summary
                        Plot hagis summary objects
calculate_complexities
                        Calculate distribution of complexities by
                        sample
calculate_diversities   Calculate diversities indices
create_binary_matrix    Create binary data matrix
diversities_table       Prints table of diversities
individual_pathotypes   Prints individual pathotypes for each sample
sample_meta             _Phytophthora sojae_ survey example metadata
summarize_gene          Calculate and summarize distribution of
                        susceptibilities by gene
