DataCluster1            A RNA secondary structure file containing
                        structure information
DataCluster2            A RNA secondary structure file containing
                        structure information
DataCluster3            A RNA secondary structure file containing
                        structure information
DataCluster4            A RNA secondary structure file containing
                        structure information
DataCompareStr1         A RNA secondary structure file containing
                        structure information
DataCompareStr2         A RNA secondary structure file containing
                        structure information
DataRNAstr              A RNA secondary structure file containing
                        structure information
RNAcirPlot              function for plotting RNA secondary structure
                        in a circos style
RNAstrCluster           A function for RNAs clustering by their
                        structure similarites
RNAstrPlot              A function for whole RNA secondary structure
                        plotting
bulgeLoopsPlot          A function for bulge loops plotting
bulge_loop              Internal function for getting bulge loops in a
                        RNA secondary structure
ct2dot                  ct2dot
externalLoopsPlot       A function for bulge loops plotting
external_loop           Internal function for getting external loops in
                        a RNA secondary structure
getCompare              Internal function for getting similarity score
                        in a RNA secondary structure
getScore                Internal function for getting similarity score
                        in a RNA secondary structure
getSubStr               Internal function for getting substructure
                        information in a RNA secondary structure
hairpinLoopsPlot        A function for hairpin loops plotting
hairpin_loop            Internal function for getting hairpin loops
internalLoopsPlot       A function for internal loops plotting
internal_loop           Internal function for getting internal loops
multiBranchLoopsPlot    A function for multi-branch loops plotting
multi_branch_loop       Internal function for getting multi-branch
                        loops
stem                    Internal function for getting stems
stemPlot                A function for stems plotting
strCompare              strCompare
strComparePlot          strComparePlot
