aa                      Build an amino acid (AA) vector
aliview                 AliView: DNA sequences viewer
alphabets               Biological alphabets
as-tibble-ape           Convert DNAbin/AAbin to tibble
as-tibble-bioseq        Convert bioseq DNA, RNA and AA to tibble
as_AAbin                Coerce to AAbin
as_AAbin.tbl_df         Coerce tibble to AAbin
as_DNAbin               Coerce to DNAbin
as_DNAbin.tbl_df        Coerce tibble to DNAbin
as_aa                   Coercion to an amino acid (AA) vector
as_dna                  Coercion to DNA vector
as_rna                  Coercion to RNA vector
as_seqinr_alignment     Coerce to seqinr alignment
dic_genetic_codes       Genetic code tables
dna                     Build a DNA vector
fragilaria              DNA sequences (rbcL) for various Fragilaria
genetic-codes           Genetic code tables
is_aa                   Test if the object is an amino acid vector
is_dna                  Test if the object is a DNA vector
is_rna                  Test if the object is a RNA vector
new_aa                  Amino acid (AA) vector constructor
new_dna                 DNA vector constructor
new_rna                 RNA vector constructor
read_fasta              Read sequences in FASTA format
rev_complement          Reverse and complement sequences
rna                     Build a RNA vector
seaview                 SeaView: DNA sequences and phylogenetic tree
                        viewer
seq-replace             Replace matched patterns in sequences
seq_cluster             Cluster sequences by similarity
seq_combine             Combine multiple sequences
seq_consensus           Find a consensus sequence for a set of
                        sequences.
seq_count_pattern       Count the number of matches in sequences
seq_crop_pattern        Crop sequences using delimiting patterns
seq_crop_position       Crop sequences between two positions
seq_detect_pattern      Detect the presence of patterns in sequences
seq_disambiguate_IUPAC
                        Disambiguate biological sequences
seq_extract_pattern     Extract matching patterns from sequences
seq_extract_position    Extract a region between two positions in
                        sequences
seq_nchar               Count the number of character in sequences
seq_nseq                Number of sequences in a vector
seq_remove_pattern      Remove matched patterns in sequences
seq_remove_position     Remove a region between two positions in
                        sequences.
seq_replace_position    Replace a region between two positions in
                        sequences
seq_rev_translate       Reverse translate amino acid sequences
seq_spellout            Spell out sequences
seq_split_kmer          Split sequences into k-mers
seq_split_pattern       Split sequences
seq_stat_gc             Compute G+C content
seq_stat_prop           Compute proportions for characters
seq_translate           Translate DNA/RNA sequences into amino acids
transcription           Transcribe DNA, reverse-transcribe RNA
write_fasta             Write sequences in FASTA format
