aa.prop.list	aa.prop.list
aa2arabic	seq_read_write
alignment2count	seq_alignment
alignment2trancount	seq_alignment
arabic2arabicFile	seq_read_write
arabic2fastaFile	seq_read_write
calcPairwiseIdentity	seq_alignment
chi.norm	chi.norm
cloud9	cloud9
ddirichlet	dirichlet_functions
dmdirichlet	dirichlet_functions
fastaFile2arabicFile	seq_read_write
getSeqKernel	getSeqKernel
hmmMargLlik	profile_HMM
krm	krm
krm.most	krm.most
krm.score.test	krm.score.test
logIntegrateDirichlet	dirichlet_functions
logIntegrateMixDirichlet	dirichlet_functions
modifyDirichlet	dirichlet_functions
rdirichlet	dirichlet_functions
readArabicFile	seq_read_write
readBlockFile	seq_read_write
readFastaFile	seq_read_write
readPriorFromFile	profile_HMM
readSelexAsMatrix	seq_read_write
readSelexFile	seq_read_write
removeGap	seq_alignment
rmdirichlet	dirichlet_functions
selexFile2arabicFile	seq_read_write
sim.liu.2007	sim.liu
sim.liu.2008	sim.liu
string2arabic	seq_read_write
stringList2arabicFile	seq_read_write
writeFastaFile	seq_read_write
