nexus-package	nexus-package
%perturbe%	arithmetic
%perturbe%,CompositionMatrix,CompositionMatrix-method	arithmetic
%power%	arithmetic
%power%,CompositionMatrix,numeric-method	arithmetic
%power%,numeric,CompositionMatrix-method	arithmetic
.ALR	LogRatio-class
.CLR	LogRatio-class
.CompositionMatrix	CompositionMatrix-class
.ILR	LogRatio-class
.LogicalMatrix	LogicalMatrix-class
.LogRatio	LogRatio-class
.LR	LogRatio-class
.NumericMatrix	NumericMatrix-class
.OutlierIndex	OutlierIndex-class
.PLR	LogRatio-class
aggregate	aggregate
aggregate,CompositionMatrix-method	aggregate
ALR-class	LogRatio-class
any_assigned	groups
any_assigned,CompositionMatrix-method	groups
any_assigned,LogRatio-method	groups
any_assigned,OutlierIndex-method	groups
any_assigned-method	groups
any_replicated	samples
any_replicated,CompositionMatrix-method	samples
any_replicated,LogRatio-method	samples
any_replicated,OutlierIndex-method	samples
any_replicated-method	samples
arctic	arctic
arithmetic	arithmetic
as_amounts	as_amounts
as_amounts,CompositionMatrix-method	as_amounts
as_amounts-method	as_amounts
as_composition	as_composition
as_composition,data.frame-method	as_composition
as_composition,matrix-method	as_composition
as_composition,numeric-method	as_composition
as_composition-method	as_composition
as_features	as_features
as_features,CompositionMatrix-method	as_features
as_features-method	as_features
as_graph	as_graph
as_graph,ALR-method	as_graph
as_graph,ILR-method	as_graph
as_graph,LR-method	as_graph
as_graph-method	as_graph
barplot	barplot
barplot,CompositionMatrix-method	barplot
cdt	reexports
chemistry	chemistry
closure	closure
closure,matrix-method	closure
closure,numeric-method	closure
closure-method	closure
CLR-class	LogRatio-class
CompositionMatrix-class	CompositionMatrix-class
covariance	covariance
covariance,ALR-method	covariance
covariance,CLR-method	covariance
covariance,CompositionMatrix-method	covariance
covariance-method	covariance
dist	dist
dist,CompositionMatrix-method	dist
get_groups	groups
get_groups,CompositionMatrix-method	groups
get_groups,LogRatio-method	groups
get_groups,OutlierIndex-method	groups
get_groups-method	groups
get_identifiers	identifiers
get_identifiers,CompositionMatrix-method	identifiers
get_identifiers,LogRatio-method	identifiers
get_identifiers,OutlierIndex-method	identifiers
get_identifiers-method	identifiers
get_samples	samples
get_samples,CompositionMatrix-method	samples
get_samples,LogRatio-method	samples
get_samples,OutlierIndex-method	samples
get_samples-method	samples
get_totals	totals
get_totals,CompositionMatrix-method	totals
get_totals-method	totals
groups	groups
hongite	hongite
identifiers	identifiers
ILR-class	LogRatio-class
is_assigned	groups
is_assigned,CompositionMatrix-method	groups
is_assigned,LogRatio-method	groups
is_assigned,OutlierIndex-method	groups
is_assigned-method	groups
is_replicated	samples
is_replicated,CompositionMatrix-method	samples
is_replicated,LogRatio-method	samples
is_replicated,OutlierIndex-method	samples
is_replicated-method	samples
LogicalMatrix-class	LogicalMatrix-class
LogRatio-class	LogRatio-class
LR-class	LogRatio-class
mahalanobis	mahalanobis
mahalanobis,CompositionMatrix-method	mahalanobis
mahalanobis,ILR-method	mahalanobis
margin	margin
margin,CompositionMatrix-method	margin
margin-method	margin
mean	mean
mean,CompositionMatrix-method	mean
metric_sd	metric_var
metric_sd,CompositionMatrix-method	metric_var
metric_sd-method	metric_var
metric_var	metric_var
metric_var,CompositionMatrix-method	metric_var
metric_var-method	metric_var
missing	replace_NA
mix	mix
mix,dist,dist-method	mix
mix,matrix,matrix-method	mix
mix-method	mix
nexus	nexus-package
NumericMatrix-class	NumericMatrix-class
OutlierIndex-class	OutlierIndex-class
outliers	outliers
outliers,CompositionMatrix-method	outliers
outliers-method	outliers
pca	reexports
pca,CompositionMatrix-method	pca
pca,LogRatio-method	pca
pca_coda	pca
perturbation	perturbation
perturbation,CompositionMatrix,CompositionMatrix-method	perturbation
perturbation,CompositionMatrix,matrix-method	perturbation
perturbation,CompositionMatrix,numeric-method	perturbation
perturbation,numeric,numeric-method	perturbation
perturbation-method	perturbation
petrography	petrography
plot	plot
plot,CompositionMatrix,missing-method	plot
plot,LogRatio,missing-method	plot_logratio
plot,OutlierIndex,missing-method	plot_outliers
plot_logratio	plot_logratio
plot_outliers	plot_outliers
PLR-class	LogRatio-class
policy	policy
powering	powering
powering,CompositionMatrix,numeric-method	powering
powering,numeric,numeric-method	powering
powering-method	powering
reexports	reexports
remove_NA	reexports
remove_zero	reexports
replace_NA	reexports
replace_NA,CompositionMatrix-method	replace_NA
replace_zero	reexports
replace_zero,CompositionMatrix-method	replace_zero
samples	samples
scalar	scalar
scalar,CompositionMatrix,CompositionMatrix-method	scalar
scalar,numeric,numeric-method	scalar
scalar-method	scalar
scale	scale
scale,CompositionMatrix-method	scale
set_groups,CompositionMatrix-method	groups
set_groups-method	groups
set_groups<-	groups
set_groups<-,CompositionMatrix-method	groups
set_identifiers,CompositionMatrix-method	identifiers
set_identifiers-method	identifiers
set_identifiers<-	identifiers
set_identifiers<-,CompositionMatrix-method	identifiers
set_samples,CompositionMatrix-method	samples
set_samples-method	samples
set_samples<-	samples
set_samples<-,CompositionMatrix-method	samples
set_totals,CompositionMatrix-method	totals
set_totals-method	totals
set_totals<-	totals
set_totals<-,CompositionMatrix-method	totals
slides	slides
subset	subset
totals	totals
transform_alr	transform_alr
transform_alr,CompositionMatrix-method	transform_alr
transform_alr-method	transform_alr
transform_clr	transform_clr
transform_clr,CompositionMatrix-method	transform_clr
transform_clr-method	transform_clr
transform_ilr	transform_ilr
transform_ilr,CompositionMatrix-method	transform_ilr
transform_ilr-method	transform_ilr
transform_inverse	transform_inverse
transform_inverse,ALR,missing-method	transform_inverse
transform_inverse,CLR,missing-method	transform_inverse
transform_inverse,ILR,missing-method	transform_inverse
transform_inverse,matrix,ILR-method	transform_inverse
transform_inverse-method	transform_inverse
transform_lr	transform_lr
transform_lr,CompositionMatrix-method	transform_lr
transform_lr-method	transform_lr
transform_plr	transform_plr
transform_plr,CompositionMatrix-method	transform_plr
transform_plr-method	transform_plr
variation	variation
variation,CompositionMatrix-method	variation
variation-method	variation
zero	replace_zero
[,CompositionMatrix,index,index,logical-method	subset
[,CompositionMatrix,index,index,missing-method	subset
[,CompositionMatrix,index,missing,logical-method	subset
[,CompositionMatrix,index,missing,missing-method	subset
[,CompositionMatrix,missing,index,logical-method	subset
[,CompositionMatrix,missing,index,missing-method	subset
[,CompositionMatrix,missing,missing,logical-method	subset
[,CompositionMatrix,missing,missing,missing-method	subset
[<-,CompositionMatrix-method	subset
[[<-,CompositionMatrix-method	subset
_PACKAGE	nexus-package
`%perturbe%`,CompositionMatrix,CompositionMatrix-method	arithmetic
`%perturbe%`-method	arithmetic
`%power%`,CompositionMatrix,numeric-method	arithmetic
`%power%`,numeric,CompositionMatrix-method	arithmetic
`%power%`-method	arithmetic
