BLOSUM80                BLOSUM80 matrix
codons                  Compute the number of codon representations for
                        a (vector of) peptide sequence(s)
coverage                Coverage as expected number of peptides given
                        all possible peptides
detect                  Detection probability in a single library of
                        size N
diversity               Diversity according to peptides paper (Sieber)
efficiency              Relative efficiency of a library
encodingReduce          Reduce the regular encoding to an easier/faster
                        format
genNeighbors            Calculate neighborhood distribution
genNeighbors_reduced    Calculate neighborhood distribution
generateCustom          Generate peptide and library information for a
                        given scheme
generateCustomLib       For a given scheme, generate a dataset with the
                        library information
generateCustomNei       For a given scheme, generate a dataset with the
                        neighborhood information
generateCustomProbs     For a given scheme, generate a dataset with the
                        peptide probabilities
getChoices              Get the number of peptides that reduce to a
                        particular reduced encoding
getCounts               Get the counts possible for each scheme and k
getNeighbors            Find all neighbors of degree one for a set of
                        peptide sequences
getNofNeighbors         Compute the number of neighbor of degree one
                        for a set of peptide sequences
libBuild                Build peptide library of k-length sequences
                        according to specified scheme
libscheme               Get the specified library scheme
makowski                Diversity index according to Makowski
ppeptide                Probability of detection of a peptide sequence
scheme                  Get the specified library scheme definition
schemes                 Built-in library schemes for peptider
