* using log directory 'd:/Rcompile/CRANpkg/local/4.7/OTrecod.Rcheck' * using R Under development (unstable) (2026-06-11 r90134 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 14.3.0 GNU Fortran (GCC) 14.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * current time: 2026-06-12 07:53:06 UTC * checking for file 'OTrecod/DESCRIPTION' ... OK * this is package 'OTrecod' version '0.1.2' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'OTrecod' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... 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[1s] NOTE checkRd: (-1) imput_cov.Rd:79: Lost braces 79 | \item van Buuren, S., Groothuis-Oudshoorn, K. (2011). mice: Multivariate Imputation by Chained Equations in R. Journal of Statistical Software, 45(3), 1–67. url{https://www.jstatsoft.org/v45/i03/} | ^ checkRd: (-1) indiv_grp_closest.Rd:47: Lost braces; missing escapes or markup? 47 | The function \code{indiv_grp_closest} is an intermediate function used in the implementation of an algorithm called {OUTCOME} (and its enrichment {R-OUTCOME}, see the reference (2) for more details) dedicated to the solving of recoding problems in data fusion using Optimal Transportation theory. | ^ checkRd: (-1) indiv_grp_closest.Rd:47: Lost braces; missing escapes or markup? 47 | The function \code{indiv_grp_closest} is an intermediate function used in the implementation of an algorithm called {OUTCOME} (and its enrichment {R-OUTCOME}, see the reference (2) for more details) dedicated to the solving of recoding problems in data fusion using Optimal Transportation theory. | ^ checkRd: (-1) merge_dbs.Rd:179: Lost braces 179 | \item van Buuren, S., Groothuis-Oudshoorn, K. (2011). mice: Multivariate Imputation by Chained Equations in R. Journal of Statistical Software, 45(3), 1–67. url{https://www.jstatsoft.org/v45/i03/} | ^ * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... [0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [15s] ERROR Running examples in 'OTrecod-Ex.R' failed The error most likely occurred in: > ### Name: imput_cov > ### Title: imput_cov() > ### Aliases: imput_cov > > ### ** Examples > > # Imputation of all incomplete covariates in the table simu_data: > data(simu_data) > > # Here we keep the complete variable "Gender" in the imputation model. > # Using MICE (REP = 3): > imput_mice <- imput_cov(simu_data, + indcol = 4:8, R_mice = 3, + meth = c("logreg", "polyreg", "polr", "logreg", "pmm") + ) > summary(imput_mice) Length Class Mode RAW 8 data.frame list IMPUTE 1 -none- character DATA_IMPUTE 5 data.frame list MICE_IMPS 3 mild list > > > # Using FAMD (NB_COMP = 3): > imput_famd <- imput_cov(simu_data, + indcol = 4:8, + meth = c("logreg", "polyreg", "polr", "logreg", "pmm"), + missMDA = TRUE + ) Error in svd(A) : infinite or missing values in 'x' Calls: imput_cov ... imputeMFA -> impute -> -> -> svd Execution halted * checking for unstated dependencies in 'tests' ... OK * checking tests ... [35s] ERROR Running 'testthat.R' [35s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(OTrecod) > > test_check("OTrecod") Saving _problems/test-imput-cov-48.R Saving _problems/test-merge_dbs-73.R [ FAIL 2 | WARN 1 | SKIP 0 | PASS 178 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-imput-cov.R:45:3'): famd works ───────────────────────────────── Error in `svd(A)`: infinite or missing values in 'x' Backtrace: ▆ 1. └─OTrecod::imput_cov(...) at test-imput-cov.R:45:3 2. └─missMDA::imputeFAMD(datcov, ncp = NB_COMP, seed = seed_choice) 3. └─missMDA::imputeMFA(...) 4. └─missMDA (local) impute(...) 5. └─FactoMineR::svd.triplet(aux.base, row.w = row.w, ncp = 1) 6. └─irlba::irlba(X, nu = ncp, nv = ncp) 7. └─base::svd(A) ── Error ('test-merge_dbs.R:68:3'): the dimensions of the output objects are validated ── Error in `svd(A)`: infinite or missing values in 'x' Backtrace: ▆ 1. └─OTrecod::merge_dbs(...) at test-merge_dbs.R:68:3 2. └─OTrecod::imput_cov(...) 3. └─missMDA::imputeFAMD(datcov, ncp = NB_COMP, seed = seed_choice) 4. └─missMDA::imputeMFA(...) 5. └─missMDA (local) impute(...) 6. └─FactoMineR::svd.triplet(aux.base, row.w = row.w, ncp = 1) 7. └─irlba::irlba(X, nu = ncp, nv = ncp) 8. └─base::svd(A) [ FAIL 2 | WARN 1 | SKIP 0 | PASS 178 ] Error: ! Test failures. Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [124s] OK * checking PDF version of manual ... [21s] OK * checking HTML version of manual ... [10s] OK * DONE Status: 2 ERRORs, 1 NOTE