* using log directory 'd:/Rcompile/CRANpkg/local/4.7/cthist.Rcheck' * using R Under development (unstable) (2026-10-24 r90762 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 14.3.0 GNU Fortran (GCC) 14.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * current time: 2026-10-25 17:05:23 UTC * checking for file 'cthist/DESCRIPTION' ... OK * this is package 'cthist' version '2.1.12' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'cthist' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s] OK * checking whether the package can be loaded with stated dependencies ... [0s] OK * checking whether the package can be unloaded cleanly ... [1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s] OK * checking whether the namespace can be unloaded cleanly ... [1s] OK * checking loading without being on the library search path ... [1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [4s] OK * checking Rd files ... [1s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... [1s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [18s] ERROR Running 'testthat.R' [18s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(cthist) > > test_check("cthist") NCT ID caused a warning: NCT00942747 Here's the original warning message: simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT00942747?history=true': HTTP status was '403 Forbidden' Saving _problems/test-clinicaltrials_gov_dates-6.R NCT ID caused a warning: NCT02329873 Here's the original warning message: simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02329873?history=true': HTTP status was '403 Forbidden' Saving _problems/test-clinicaltrials_gov_download-8.R Version caused a warning: NCT05827978 version 3 Here's the original warning message: simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT05827978/history/3': HTTP status was '403 Forbidden' Saving _problems/test-clinicaltrials_gov_locations-12.R Version caused a warning: NCT00942747 version 1 Here's the original warning message: simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT00942747/history/1': HTTP status was '403 Forbidden' Saving _problems/test-clinicaltrials_gov_version-6.R Version caused a warning: NCT02110043 version 1 Here's the original warning message: simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '403 Forbidden' Saving _problems/test-clinicaltrials_gov_version_central_contacts-12.R Version caused a warning: NCT02110043 version 1 Here's the original warning message: simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '403 Forbidden' Saving _problems/test-clinicaltrials_gov_version_criteria-12.R Version caused a warning: NCT02110043 version 1 Here's the original warning message: simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '403 Forbidden' Saving _problems/test-clinicaltrials_gov_version_enrol-12.R Version caused a warning: NCT02110043 version 1 Here's the original warning message: simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '403 Forbidden' Saving _problems/test-clinicaltrials_gov_version_enroltype-12.R NCT ID caused a warning: NCT00942747 Here's the original warning message: simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT00942747?history=true': HTTP status was '403 Forbidden' Error downloading version: NCT00942747 version -1 Here's the original error message: Error in dates$version_number: $ operator is invalid for atomic vectors Version caused a warning: NCT02110043 version 1 Here's the original warning message: simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '403 Forbidden' Saving _problems/test-clinicaltrials_gov_version_lead_sponsor-12.R Version caused a warning: NCT02110043 version 1 Here's the original warning message: simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '403 Forbidden' Saving _problems/test-clinicaltrials_gov_version_max_age-12.R Version caused a warning: NCT02110043 version 1 Here's the original warning message: simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '403 Forbidden' Saving _problems/test-clinicaltrials_gov_version_min_age-12.R Version caused a warning: NCT02110043 version 1 Here's the original warning message: simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '403 Forbidden' Saving _problems/test-clinicaltrials_gov_version_om_data-12.R Version caused a warning: NCT02110043 version 1 Here's the original warning message: simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '403 Forbidden' Saving _problems/test-clinicaltrials_gov_version_orgstudyid-12.R Version caused a warning: NCT02110043 version 1 Here's the original warning message: simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '403 Forbidden' Saving _problems/test-clinicaltrials_gov_version_ostatus-12.R Version caused a warning: NCT02110043 version 1 Here's the original warning message: simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '403 Forbidden' Saving _problems/test-clinicaltrials_gov_version_overall_contacts-12.R Version caused a warning: NCT02110043 version 1 Here's the original warning message: simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '403 Forbidden' Saving _problems/test-clinicaltrials_gov_version_pcdate-12.R Version caused a warning: NCT00098137 version 0 Here's the original warning message: simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT00098137/history/0': HTTP status was '403 Forbidden' Saving _problems/test-clinicaltrials_gov_version_pcdate_none-12.R Version caused a warning: NCT02110043 version 1 Here's the original warning message: simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '403 Forbidden' Saving _problems/test-clinicaltrials_gov_version_pcdate_precision-12.R Version caused a warning: NCT02110043 version 1 Here's the original warning message: simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '403 Forbidden' Saving _problems/test-clinicaltrials_gov_version_pcdate_type-12.R Version caused a warning: NCT04315480 version 2 Here's the original warning message: simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT04315480/history/2': HTTP status was '403 Forbidden' Saving _problems/test-clinicaltrials_gov_version_references-12.R Version caused a warning: NCT02110043 version 1 Here's the original warning message: simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '403 Forbidden' Saving _problems/test-clinicaltrials_gov_version_responsible_party-12.R Version caused a warning: NCT05168917 version 1 Here's the original warning message: simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT05168917/history/1': HTTP status was '403 Forbidden' Version caused a warning: NCT05168917 version 3 Here's the original warning message: simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT05168917/history/3': HTTP status was '403 Forbidden' Saving _problems/test-clinicaltrials_gov_version_results_posted-14.R Version caused a warning: NCT00942747 version 1 Here's the original warning message: simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT00942747/history/1': HTTP status was '403 Forbidden' Saving _problems/test-clinicaltrials_gov_version_secondaryids-16.R Version caused a warning: NCT02110043 version 1 Here's the original warning message: simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '403 Forbidden' Saving _problems/test-clinicaltrials_gov_version_sex-12.R Version caused a warning: NCT02110043 version 1 Here's the original warning message: simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '403 Forbidden' Saving _problems/test-clinicaltrials_gov_version_startdate-12.R Version caused a warning: NCT00003636 version 0 Here's the original warning message: simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT00003636/history/0': HTTP status was '403 Forbidden' Saving _problems/test-clinicaltrials_gov_version_startdate_none-12.R Version caused a warning: NCT02110043 version 1 Here's the original warning message: simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '403 Forbidden' Saving _problems/test-clinicaltrials_gov_version_startdate_precision-12.R Version caused a warning: NCT02110043 version 1 Here's the original warning message: simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '403 Forbidden' Saving _problems/test-clinicaltrials_gov_version_volunteers-12.R NCT ID caused a warning: NCT02586649 Here's the original warning message: simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02586649?history=true': HTTP status was '403 Forbidden' Here's the original error message: Error in UseMethod("pull"): no applicable method for 'pull' applied to an object of class "character" Saving _problems/test-extract_publications-7.R NCT ID caused a warning: NCT04338971 Here's the original warning message: simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT04338971?history=true': HTTP status was '403 Forbidden' Saving _problems/test-overall_status_lengths-4.R [ FAIL 30 | WARN 0 | SKIP 0 | PASS 1 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-clinicaltrials_gov_dates.R:3:5'): ClinicalTrials.gov version dates download correctly ── Error in `result$version_date`: $ operator is invalid for atomic vectors Backtrace: ▆ 1. └─testthat::expect_equal(...) at test-clinicaltrials_gov_dates.R:3:5 2. └─testthat::quasi_label(enquo(object), label) 3. └─rlang::eval_bare(expr, quo_get_env(quo)) ── Error ('test-clinicaltrials_gov_download.R:6:5'): ClinicalTrials.gov history entries mass-download correctly ── Error in `UseMethod("pull")`: no applicable method for 'pull' applied to an object of class "character" Backtrace: ▆ 1. ├─cthist::clinicaltrials_gov_download(...) at test-clinicaltrials_gov_download.R:6:5 2. │ └─clinicaltrials_gov_dates(nctid, FALSE) %>% ... 3. └─dplyr::pull(., "version_date") ── Error ('test-clinicaltrials_gov_locations.R:9:9'): ClinicalTrials.gov location data downloads correctly ── Error in `version$locations`: $ operator is invalid for atomic vectors Backtrace: ▆ 1. ├─testthat::expect_equal(...) at test-clinicaltrials_gov_locations.R:9:9 2. │ └─testthat::quasi_label(enquo(object), label) 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. └─jsonlite::fromJSON(version$locations) ── Failure ('test-clinicaltrials_gov_version.R:3:5'): ClinicalTrials.gov version downloads correctly ── Expected `length(result) == 25 || result == "Error"` to equal TRUE. Differences: `actual`: FALSE `expected`: TRUE ── Error ('test-clinicaltrials_gov_version_central_contacts.R:9:9'): ClinicalTrials.gov contacts downloads correctly ── Error in `version$central_contacts`: $ operator is invalid for atomic vectors Backtrace: ▆ 1. ├─testthat::expect_equal(...) at test-clinicaltrials_gov_version_central_contacts.R:9:9 2. │ └─testthat::quasi_label(enquo(object), label) 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. └─jsonlite::fromJSON(version$central_contacts) ── Error ('test-clinicaltrials_gov_version_criteria.R:9:9'): ClinicalTrials.gov criteria downloads correctly ── Error in `version$criteria`: $ operator is invalid for atomic vectors Backtrace: ▆ 1. └─testthat::expect_equal(version$criteria, "
Inclusion Criteria (MCI patients):
amnestic and amnestic plus MCI with:
Exclusion Criteria: