* using log directory 'd:/Rcompile/CRANpkg/local/4.5/mets.Rcheck'
* using R version 4.5.3 (2026-03-11 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.3.0
    GNU Fortran (GCC) 14.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'mets/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'mets' version '1.3.10'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'mets' can be installed ... OK
* used C compiler: 'gcc.exe (GCC) 14.3.0'
* used Fortran compiler: 'GNU Fortran (GCC) 14.3.0'
* used C++ compiler: 'g++.exe (GCC) 14.3.0'
* checking installed package size ... INFO
  installed size is  8.6Mb
  sub-directories of 1Mb or more:
    R      1.7Mb
    doc    2.3Mb
    libs   2.5Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [3s] OK
* checking whether the package can be loaded with stated dependencies ... [3s] OK
* checking whether the package can be unloaded cleanly ... [3s] OK
* checking whether the namespace can be loaded with stated dependencies ... [3s] OK
* checking whether the namespace can be unloaded cleanly ... [3s] OK
* checking loading without being on the library search path ... [3s] OK
* checking whether startup messages can be suppressed ... [2s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [119s] OK
* checking Rd files ... [4s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... [1s] OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compiled code ... OK
* checking usage of KIND in Fortran files ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [86s] ERROR
Running examples in 'mets-Ex.R' failed
The error most likely occurred in:

> ### Name: test_marginalMean
> ### Title: Pepe-Mori Test for Marginal Mean Comparison
> ### Aliases: test_marginalMean
> 
> ### ** Examples
> 
> data(bmt,package="mets")
> bmt$time <- bmt$time+runif(nrow(bmt))*0.01
> bmt$id <- 1:nrow(bmt)
> dcut(bmt) <- age.f~age
>      
> fg=cifregFG(Event(time,cause)~tcell,data=bmt,cause=1)
>  
> ## computing tests for difference  for CIF
> pmt <- test_marginalMean(Event(time,cause)~strata(tcell)+cluster(id),data=bmt,cause=1,
+ 			 death.code=1:2,death.code.prop=2,cens.code=0,time=40)
Warning in check_ic_mean_zero(ic_theta) :
  IC does not have mean zero (max |mean|/rms = 0.11). Using lava.options(check.ic = FALSE) disables the warning globally.
Warning in estimate.default(NULL, ...) :
  The 'null', 'contrast', 'type', 'back.transform', 'level' and 'var.adj' arguments of estimate.default() are deprecated and will be removed in version 1.9.3. Use summary(estimate(...), null=, contrast=, type=, transform=,level=, df=, var.adj=) instead.
Warning in estimate.default(pepe.mori, null = 0) :
  The 'null', 'contrast', 'type', 'back.transform', 'level' and 'var.adj' arguments of estimate.default() are deprecated and will be removed in version 1.9.3. Use summary(estimate(...), null=, contrast=, type=, transform=,level=, df=, var.adj=) instead.
Warning in estimate.default(b, ...) :
  The 'null', 'contrast', 'type', 'back.transform', 'level' and 'var.adj' arguments of estimate.default() are deprecated and will be removed in version 1.9.3. Use summary(estimate(...), null=, contrast=, type=, transform=,level=, df=, var.adj=) instead.
> summary(pmt) 
Error in dimnames(x) <- dn : 
  length of 'dimnames' [1] not equal to array extent
Calls: summary -> summary.marginalTest -> rownames<-
Execution halted
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [25s] OK
  Running 'tinytest.R' [24s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [266s] ERROR
Error(s) in re-building vignettes:
--- re-building 'basic-dutils.Rmd' using rmarkdown
--- finished re-building 'basic-dutils.Rmd'

--- re-building 'binomial-family.Rmd' using rmarkdown
--- finished re-building 'binomial-family.Rmd'

--- re-building 'binomial-twin.Rmd' using rmarkdown
--- finished re-building 'binomial-twin.Rmd'

--- re-building 'binreg-TRS.Rmd' using rmarkdown
--- finished re-building 'binreg-TRS.Rmd'

--- re-building 'binreg-ate.Rmd' using rmarkdown
--- finished re-building 'binreg-ate.Rmd'

--- re-building 'binreg.Rmd' using rmarkdown
--- finished re-building 'binreg.Rmd'

--- re-building 'cifreg.Rmd' using rmarkdown
--- finished re-building 'cifreg.Rmd'

--- re-building 'cooking-survival-data.Rmd' using rmarkdown
--- finished re-building 'cooking-survival-data.Rmd'

--- re-building 'cumulative-cost.Rmd' using rmarkdown
--- finished re-building 'cumulative-cost.Rmd'

--- re-building 'glm-utility.Rmd' using rmarkdown
--- finished re-building 'glm-utility.Rmd'

--- re-building 'haplo-discrete-ttp.Rmd' using rmarkdown
--- finished re-building 'haplo-discrete-ttp.Rmd'

--- re-building 'interval-discrete-survival.Rmd' using rmarkdown
--- finished re-building 'interval-discrete-survival.Rmd'

--- re-building 'marginal-cox.Rmd' using rmarkdown
--- finished re-building 'marginal-cox.Rmd'

--- re-building 'mediation-survival.Rmd' using rmarkdown
--- finished re-building 'mediation-survival.Rmd'

--- re-building 'phreg_rct.Rmd' using rmarkdown
--- finished re-building 'phreg_rct.Rmd'

--- re-building 'quantitative-twin.Rmd' using rmarkdown
--- finished re-building 'quantitative-twin.Rmd'

--- re-building 'recurrent-events.Rmd' using rmarkdown

Quitting from recurrent-events.Rmd:281-289 [unnamed-chunk-7]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `dimnames(x) <- dn`:
! length of 'dimnames' [1] not equal to array extent
---
Backtrace:
     ▆
  1. ├─base::withVisible(knit_print(x, ...))
  2. ├─knitr::knit_print(x, ...)
  3. └─knitr:::knit_print.default(x, ...)
  4.   └─knitr::normal_print(x)
  5.     ├─base::print(x)
  6.     └─mets:::print.marginalTest(x)
  7.       ├─base::print(summary(x), ...)
  8.       ├─base::summary(x)
  9.       └─mets:::summary.marginalTest(x)
 10.         └─base::`rownames<-`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'recurrent-events.Rmd' failed with diagnostics:
length of 'dimnames' [1] not equal to array extent
--- failed re-building 'recurrent-events.Rmd'

--- re-building 'rmst-ate.Rmd' using rmarkdown
--- finished re-building 'rmst-ate.Rmd'

--- re-building 'survival-ate.Rmd' using rmarkdown
--- finished re-building 'survival-ate.Rmd'

--- re-building 'time-to-event-family-studies-arev.Rmd' using rmarkdown
--- finished re-building 'time-to-event-family-studies-arev.Rmd'

--- re-building 'twostage-survival.Rmd' using rmarkdown
--- finished re-building 'twostage-survival.Rmd'

--- re-building 'while-alive.Rmd' using rmarkdown
--- finished re-building 'while-alive.Rmd'

SUMMARY: processing the following file failed:
  'recurrent-events.Rmd'

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [28s] OK
* checking HTML version of manual ... [35s] OK
* DONE
Status: 2 ERRORs