# Generated by roxygen2: do not edit by hand

S3method(create_community_matrix_object,mass_data)
S3method(create_community_matrix_object,mothur_cluster)
S3method(filter_peak_table,filter_cv)
S3method(filter_peak_table,filter_group)
S3method(filter_peak_table,filter_insource_ions)
S3method(filter_peak_table,filter_mispicked_ions)
S3method(length,reference_database)
S3method(print,community_object)
S3method(print,reference_database)
export(alpha_summary)
export(annotate_ms2)
export(change_rt_to_seconds_or_minute)
export(cluster_data)
export(combined_reference_database)
export(compute_molecular_formulas)
export(convert_to_group_averages)
export(create_community_matrix)
export(create_community_matrix_object)
export(dist_ms2)
export(dist_shared)
export(filter_cv_params)
export(filter_group_params)
export(filter_insource_ions_params)
export(filter_mispicked_ions_params)
export(filter_peak_table)
export(generate_a_combined_table)
export(get_community_matrix)
export(get_metadata)
export(get_molecular_formula_preds)
export(get_ms1_data)
export(get_ms2_matches)
export(get_ms2_peaks_data)
export(get_peak_table)
export(get_reference_data)
export(get_samples)
export(import_all_data)
export(modified_cosine_params)
export(ms2_ms1_compare)
export(mums2_example)
export(rarefy_ms)
export(read_hmdb)
export(read_msp)
export(spec_entropy_params)
importFrom(RaMS,grabMSdata)
importFrom(Rcpp,sourceCpp)
importFrom(clustur,cluster)
importFrom(clustur,create_sparse_matrix)
importFrom(clustur,get_abundance)
importFrom(clustur,read_count)
importFrom(clustur,read_dist)
importFrom(data.table,.SD)
importFrom(data.table,as.data.table)
importFrom(data.table,data.table)
importFrom(mpactr,filter_cv)
importFrom(mpactr,filter_group)
importFrom(mpactr,filter_insource_ions)
importFrom(mpactr,filter_mispicked_ions)
importFrom(mpactr,get_metadata)
importFrom(mpactr,get_peak_table)
importFrom(mpactr,import_data)
importFrom(parallel,detectCores)
importFrom(stats,as.dist)
importFrom(utils,head)
importFrom(utils,tail)
importFrom(xml2,read_xml)
importFrom(xml2,xml_children)
importFrom(xml2,xml_find_all)
importFrom(xml2,xml_name)
importFrom(xml2,xml_text)
useDynLib(mums2, .registration = TRUE)
