# Reading, Quality Control and Preprocessing of MBA (Multiplex Bead Assay) Data

## Documentation for package ‘PvSTATEM’ version 0.2.2

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package README

## Help Pages

create_standard_curve_model_analyte | Create a standard curve model for a certain analyte
generate_levey_jennings_report | Generate a Levey-Jennings Report for Multiple Plates.
generate_plate_report | Generate a report for a plate.
get_nmfi | Calculate normalised MFI values for a plate
handle_high_dose_hook | Detect and handle the high dose hook effect
is_valid_data_type | Check validity of given data type
is_valid_sample_type | Check validity of given sample type
Model | Logistic regression model for the standard curve
Plate | Plate object
PlateBuilder | PlateBuilder
plot_counts | Plot counts in a 96-well plate
plot_layout | Plot layout of a 96-well plate
plot_levey_jennings | Plot Levey-Jennings chart
plot_mfi_for_analyte | Plot MFI value distribution for a given analyte
plot_standard_curve_analyte | Standard curves
plot_standard_curve_analyte_with_model | Plot standard curve of a certain analyte with fitted model
plot_standard_curve_stacked | Standard curve stacked plot for levey-jennings report
predict.Model | Predict the RAU values from the MFI values
process_dir | Process a dir of files to generate normalised data and reports
process_file | Process a file to generate normalised data and reports
process_plate | Process a plate and save output values to a CSV
read_intelliflex_format | Read the Intelliflex format data
read_layout_data | Read layout data from a file
read_luminex_data | Read Luminex Data
read_xponent_format | Read the xPONENT format data
translate_sample_names_to_sample_types | Translate sample names to sample types