Package: SCIntRuler
Type: Package
Title: Guiding the Integration of Multiple Single-Cell RNA-Seq Datasets
Version: 0.99.8
Authors@R: 
    person(given = "Yue", family = "Lyu", email = "yuelyu0521@gmail.com",
           role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-8912-6624"))
Description: The accumulation of single-cell RNA sequencing (scRNA-seq) studies
    highlights the potential benefits of integrating multiple datasets. By
    augmenting sample sizes and enhancing analytical robustness, integration
    can lead to more insightful biological conclusions. However, challenges
    arise due to the inherent diversity and batch discrepancies within and
    across studies. 'SCIntRuler' addresses these challenges by guiding the
    integration of multiple scRNA-seq datasets.
License: MIT + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.3.0
Imports: Rcpp, Matrix, base, Seurat, SeuratObject, MatrixGenerics,
        SingleCellExperiment, SummarizedExperiment, dplyr, coin,
        harmony, ggplot2, gridExtra, cowplot, magrittr, stats
LinkingTo: Rcpp
URL: https://github.com/yuelyu21/SCIntRuler,
        https://yuelyu21.github.io/SCIntRuler/
BugReports: https://github.com/yuelyu21/SCIntRuler/issues
Suggests: BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0)
VignetteBuilder: knitr
Depends: R (>= 4.3.0)
LazyData: true
LazyDataCompression: xz
Config/testthat/edition: 3
NeedsCompilation: yes
Packaged: 2026-09-15 14:15:23 UTC; runner
Author: Yue Lyu [aut, cre] (ORCID: <https://orcid.org/0000-0002-8912-6624>)
Maintainer: Yue Lyu <yuelyu0521@gmail.com>
Repository: CRAN
Date/Publication: 2026-09-16 07:00:02 UTC
