e5f54c9bed7dd405c267f7d6ceaea293 *DESCRIPTION
b151931a11503acca04a698123e99c67 *LICENSE
1f5e8b7268ae6be08b0ab39c903296fa *NAMESPACE
5f7d91749e0c8ba2949ff2e9ca80ae5e *NEWS.md
36ff9909bd94f9bb392db5b94a609c61 *R/add_tree.R
332a1cddc345f0cae98f50d0868b895c *R/check_taxa.R
ed0f19e8c57e55ad26022829991c9f35 *R/data.R
d632a5b9bc9d82d4e7ffaaf3824d2147 *R/node_presence_matrix.R
cd8c1d8ff6b6d8472a95af601ec354cc *R/node_support.R
6b01429410912d21c39d7cf9f370c355 *R/phylorug-package.R
b3c506c723fe18ccb27f6c04c08d97f9 *R/plot_node_rug.R
e3ccb9425767b8b775165262d8c17f46 *R/plot_phylorug.R
a69f5f70b3945a6b68d3af29e1a2e359 *R/prune_to_shared.R
128b35dbddc12db16169d149fd9bcd9c *R/read_trees.R
f86344bd51f10e8e492245ed18d8510c *R/translate_tips.R
85fe48864193ba5a7a063981caa723e1 *README.md
9d5d57306c989a862d29353812d857e7 *build/partial.rdb
15300f64e5284bb858cbeb76e32b3c2a *build/vignette.rds
3bb993d6af2e5607efeaaf3f92c41170 *data/sample_trees.rda
1dfdc39f9812c4feffa4646996ed62fd *inst/CITATION
8a56d50970cd3f04dea36a5a6810cbee *inst/doc/phylorug.R
46601ed43eb66731d2d4f4c1ef742e6f *inst/doc/phylorug.Rmd
ee3550520e68bc956bc9265dd3cfde0b *inst/doc/phylorug.html
60320db56ad9f4ca8db956c0d9f1c52d *inst/extdata/beetles_50p/50p_ASTRAL_partition_entropy.tre
65836133f17500f974127f91b9699b61 *inst/extdata/beetles_50p/50p_ASTRAL_uce.tre
e61f47f8b68f8979b1e09530bc5d171b *inst/extdata/beetles_50p/50p_ghost.tre
349d9c411d3f14a5d4b2c0146c9ac81f *inst/extdata/beetles_50p/50p_partition_entropy.tre
c4797247f26645ad84d979e9d8e904cb *inst/extdata/beetles_50p/50p_uce.tre
5d5b060ea4e2a3d7386651964c4854a2 *inst/extdata/beetles_50p/biogeo.csv
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5a1b173a80ee10991cd66277cf1415ef *inst/extdata/beetles_70p/70p_ghost.tre
3145f14fc3fbc902dc89015c1aa4eac1 *inst/extdata/beetles_70p/70p_partition_entropy.tre
eb210e81edcc3d20de6ee5285a8e4044 *inst/extdata/beetles_70p/70p_uce.tre
5d5b060ea4e2a3d7386651964c4854a2 *inst/extdata/beetles_70p/biogeo.csv
48cac82e83f6f407dcdfa1b87a7c4e93 *inst/extdata/culicomorpha/Matrix1-kpi_ASTRAL.treefile
323fd320b18e1d8cc734902124c07dd2 *inst/extdata/culicomorpha/Matrix1-kpi_PMSF(H1.guide).treefile
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a7eab370f5e6a2eac545d9ec6b89f184 *inst/extdata/culicomorpha/Matrix2_partitioning.treefile
d6f0397baf4dba67efb8ba99202eeacf *man/add_tree.Rd
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43fd164227cc1dc305635dc68360e75d *man/figures/logo.png
4785fa611d1e314f32c3d2f210c1d861 *man/node_presence_matrix.Rd
d265e5d14d5a3f2fcfb68100901d6c43 *man/node_support.Rd
65c7d918b2f1bce6469253767efbb45c *man/phylorug-package.Rd
bc25ffe43e41050ba1ffe8a5e71f9bd7 *man/plot_node_rug.Rd
80cb6e9479de481f1a5d6b0502a2f4c0 *man/plot_phylorug.Rd
9238c60f549293eeaedabdd3713eb595 *man/prune_to_shared.Rd
d828c4034a72ba6e1b6a9b0045633989 *man/read_trees.Rd
2fd5794181cb6589c2e50373c786dfb5 *man/sample_trees.Rd
69ba82dcedbc036b9e9bc2cd3ba51480 *man/translate_tips.Rd
d473956233b0f3d422aa2c9beeaae98f *tests/testthat.R
b90463f5ad4eb422347e60bcea6163f4 *tests/testthat/test-add_tree.R
9390faa1d46cfa22cdab314ce357e808 *tests/testthat/test-check_taxa.R
b9eaa10d3e77568822a3cff47c105362 *tests/testthat/test-node_presence_matrix.R
cb9af5e216950538a0c75ab261727d74 *tests/testthat/test-node_support.R
14eb6f2493ef9ae5b3c9b731ce3a37ff *tests/testthat/test-plot_node_rug.R
2c5d2bf046b324663d34aa4bba027016 *tests/testthat/test-plot_phylorug.R
3dac92d7cb8c8b7cbd364d4f83702ae1 *tests/testthat/test-prune_to_shared.R
8e69c3ff0b0c868e8cda77deae629a6b *tests/testthat/test-read_trees.R
ae902b4ee01ebca5ae645c20cdd6caed *tests/testthat/test-sample_trees.R
de5ce746636dbf2d015451cce0725ebb *tests/testthat/test-translate_tips.R
46601ed43eb66731d2d4f4c1ef742e6f *vignettes/phylorug.Rmd
