Last updated on 2025-05-14 02:50:09 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.2.2 | 64.68 | 812.63 | 877.31 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.2.2 | 59.90 | 606.73 | 666.63 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.2.2 | 1467.78 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.2.2 | 1501.95 | OK | |||
| r-devel-windows-x86_64 | 0.2.2 | 87.00 | 749.00 | 836.00 | ERROR | |
| r-patched-linux-x86_64 | 0.2.2 | 62.02 | 809.82 | 871.84 | OK | |
| r-release-linux-x86_64 | 0.2.2 | 63.03 | 805.57 | 868.60 | OK | |
| r-release-macos-arm64 | 0.2.2 | 266.00 | OK | |||
| r-release-macos-x86_64 | 0.2.2 | 455.00 | OK | |||
| r-release-windows-x86_64 | 0.2.2 | 81.00 | 546.00 | 627.00 | ERROR | |
| r-oldrel-macos-arm64 | 0.2.2 | 289.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 0.2.2 | 466.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 0.2.2 | 84.00 | 992.00 | 1076.00 | OK |
Version: 0.2.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'STMOB.Rmd' using rmarkdown
trying URL 'https://github.com/XiaoZhangryy/CAESAR.Suite/blob/master/vignettes_data/MOB_ST.rda?raw=true'
Content type 'application/octet-stream' length 5988380 bytes (5.7 MB)
==================================================
downloaded 5.7 MB
trying URL 'https://github.com/XiaoZhangryy/CAESAR.Suite/blob/master/vignettes_data/MOB_scRNA.rda?raw=true'
Content type 'application/octet-stream' length 48066404 bytes (45.8 MB)
==================================================
downloaded 45.8 MB
Performing log-normalization
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Calculating gene variances
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Calculating feature variances of standardized and clipped values
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Performing log-normalization
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Calculating gene variances
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Calculating feature variances of standardized and clipped values
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
--- finished re-building 'STMOB.Rmd'
--- re-building 'XeniumBC.Rmd' using rmarkdown
trying URL 'https://github.com/XiaoZhangryy/CAESAR.Suite/blob/master/vignettes_data/BC_scRNAList.rda?raw=true'
Content type 'application/octet-stream' length 2310272 bytes (2.2 MB)
==================================================
downloaded 2.2 MB
trying URL 'https://github.com/XiaoZhangryy/CAESAR.Suite/blob/master/vignettes_data/BC_XeniumList.rda?raw=true'
Content type 'application/octet-stream' length 1256437 bytes (1.2 MB)
==================================================
downloaded 1.2 MB
trying URL 'https://github.com/XiaoZhangryy/CAESAR.Suite/blob/master/vignettes_data/BC_feature_imgList.rda?raw=true'
Content type 'application/octet-stream' length 12559173 bytes (12.0 MB)
==================================================
downloaded 12.0 MB
Performing log-normalization
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Performing log-normalization
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Performing log-normalization
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Performing log-normalization
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
trying URL 'https://github.com/XiaoZhangryy/CAESAR.Suite/blob/master/vignettes_data/pathway4BC.rda?raw=true'
Quitting from XeniumBC.Rmd:311-331 [unnamed-chunk-18]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `download.file()`:
! cannot open URL 'https://github.com/XiaoZhangryy/CAESAR.Suite/blob/master/vignettes_data/pathway4BC.rda?raw=true'
---
Backtrace:
▆
1. └─utils::download.file(githubURL, pathway4BC_file, mode = "wb")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'XeniumBC.Rmd' failed with diagnostics:
cannot open URL 'https://github.com/XiaoZhangryy/CAESAR.Suite/blob/master/vignettes_data/pathway4BC.rda?raw=true'
--- failed re-building 'XeniumBC.Rmd'
SUMMARY: processing the following file failed:
'XeniumBC.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-windows-x86_64
Version: 0.2.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'STMOB.Rmd' using rmarkdown
trying URL 'https://github.com/XiaoZhangryy/CAESAR.Suite/blob/master/vignettes_data/MOB_ST.rda?raw=true'
Content type 'application/octet-stream' length 5988380 bytes (5.7 MB)
==================================================
downloaded 5.7 MB
trying URL 'https://github.com/XiaoZhangryy/CAESAR.Suite/blob/master/vignettes_data/MOB_scRNA.rda?raw=true'
Content type 'application/octet-stream' length 48066404 bytes (45.8 MB)
==================================================
downloaded 45.8 MB
Performing log-normalization
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Calculating gene variances
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Calculating feature variances of standardized and clipped values
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Performing log-normalization
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Calculating gene variances
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Calculating feature variances of standardized and clipped values
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
--- finished re-building 'STMOB.Rmd'
--- re-building 'XeniumBC.Rmd' using rmarkdown
trying URL 'https://github.com/XiaoZhangryy/CAESAR.Suite/blob/master/vignettes_data/BC_scRNAList.rda?raw=true'
Content type 'application/octet-stream' length 2310272 bytes (2.2 MB)
==================================================
downloaded 2.2 MB
trying URL 'https://github.com/XiaoZhangryy/CAESAR.Suite/blob/master/vignettes_data/BC_XeniumList.rda?raw=true'
Content type 'application/octet-stream' length 1256437 bytes (1.2 MB)
==================================================
downloaded 1.2 MB
trying URL 'https://github.com/XiaoZhangryy/CAESAR.Suite/blob/master/vignettes_data/BC_feature_imgList.rda?raw=true'
Quitting from XeniumBC.Rmd:41-62 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `download.file()`:
! cannot open URL 'https://github.com/XiaoZhangryy/CAESAR.Suite/blob/master/vignettes_data/BC_feature_imgList.rda?raw=true'
---
Backtrace:
▆
1. └─utils::download.file(githubURL, BC_feature_imgList_file, mode = "wb")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'XeniumBC.Rmd' failed with diagnostics:
cannot open URL 'https://github.com/XiaoZhangryy/CAESAR.Suite/blob/master/vignettes_data/BC_feature_imgList.rda?raw=true'
--- failed re-building 'XeniumBC.Rmd'
SUMMARY: processing the following file failed:
'XeniumBC.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-windows-x86_64
Version: 0.2.2
Check: installed package size
Result: NOTE
installed size is 8.4Mb
sub-directories of 1Mb or more:
data 1.4Mb
doc 1.2Mb
libs 5.5Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64