Last updated on 2025-12-16 03:48:54 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.4 | 12.44 | 244.99 | 257.43 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.4 | 10.18 | 220.22 | 230.40 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1.4 | 23.00 | 317.11 | 340.11 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.1.4 | 29.00 | 402.64 | 431.64 | OK | |
| r-devel-windows-x86_64 | 1.1.4 | 20.00 | 187.00 | 207.00 | OK | |
| r-patched-linux-x86_64 | 1.1.4 | 15.20 | 300.73 | 315.93 | OK | |
| r-release-linux-x86_64 | 1.1.4 | 13.77 | 256.04 | 269.81 | OK | |
| r-release-macos-arm64 | 1.1.4 | OK | ||||
| r-release-macos-x86_64 | 1.1.4 | 10.00 | 184.00 | 194.00 | ERROR | |
| r-release-windows-x86_64 | 1.1.4 | 21.00 | 187.00 | 208.00 | OK | |
| r-oldrel-macos-arm64 | 1.1.4 | OK | ||||
| r-oldrel-macos-x86_64 | 1.1.4 | 11.00 | 203.00 | 214.00 | ERROR | |
| r-oldrel-windows-x86_64 | 1.1.4 | 24.00 | 238.00 | 262.00 | OK |
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [87s/125s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.532, system: 0.039, elapsed: 2.007 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.476, system: 0.096, elapsed: 12.199 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.194, system: 0.015, elapsed: 0.331 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.935, system: 0.231, elapsed: 5.227 seconds]
Computing values for grid cells...
... done. [user: 0.177, system: 0.008, elapsed: 0.304 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.869, system: 0.410, elapsed: 20.756 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.612, system: 0.057, elapsed: 2.230 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.759, system: 0.299, elapsed: 14.355 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.203, system: 0.018, elapsed: 0.336 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.170, system: 0.287, elapsed: 5.971 seconds]
Computing values for grid cells...
... done. [user: 0.186, system: 0.008, elapsed: 0.283 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.488, system: 0.705, elapsed: 24.014 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.784, system: 0.078, elapsed: 2.546 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.903, system: 0.345, elapsed: 15.377 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.202, system: 0.018, elapsed: 0.312 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.091, system: 0.271, elapsed: 6.479 seconds]
Computing values for grid cells...
... done. [user: 0.190, system: 0.016, elapsed: 0.243 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 4 3
... computing probabilities from permuted values ...
... done. [user: 1.271, system: 0.290, elapsed: 1.259 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 18.090, system: 1.062, elapsed: 27.030 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.810, system: 0.101, elapsed: 2.396 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.549, system: 0.304, elapsed: 10.967 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.205, system: 0.020, elapsed: 0.276 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.313, system: 0.362, elapsed: 6.082 seconds]
Computing values for grid cells...
... done. [user: 0.186, system: 0.014, elapsed: 0.284 seconds]
Starting 50 permutations...
... serially ...
|
| | 0%
|
|== | 2%
|
|=== | 4%
|
|===== | 6%
|
|====== | 8%
|
|======== | 10%
|
|========== | 12%
|
|=========== | 14%
|
|============= | 16%
|
|============== | 18%
|
|================ | 20%
|
|================== | 22%
|
|=================== | 24%
|
|===================== | 26%
|
|====================== | 28%
|
|======================== | 30%
|
|========================== | 32%
|
|=========================== | 34%
|
|============================= | 36%
|
|============================== | 38%
|
|================================ | 40%
|
|================================== | 42%
|
|=================================== | 44%
|
|===================================== | 46%
|
|====================================== | 48%
|
|======================================== | 50%
|
|========================================== | 52%
|
|=========================================== | 54%
|
|============================================= | 56%
|
|============================================== | 58%
|
|================================================ | 60%
|
|================================================== | 62%
|
|=================================================== | 64%
|
|===================================================== | 66%
|
|====================================================== | 68%
|
|======================================================== | 70%
|
|========================================================== | 72%
|
|=========================================================== | 74%
|
|============================================================= | 76%
|
|============================================================== | 78%
|
|================================================================ | 80%
|
|================================================================== | 82%
|
|=================================================================== | 84%
|
|===================================================================== | 86%
|
|====================================================================== | 88%
|
|======================================================================== | 90%
|
|========================================================================== | 92%
|
|=========================================================================== | 94%
|
|============================================================================= | 96%
|
|============================================================================== | 98%
|
|================================================================================| 100%
... computing probabilities from permuted values ...
... done. [user: 10.825, system: 0.605, elapsed: 23.270 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 27.550, system: 1.451, elapsed: 44.178 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [84s/146s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.594, system: 0.036, elapsed: 3.070 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.432, system: 0.075, elapsed: 17.902 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.195, system: 0.015, elapsed: 0.394 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.759, system: 0.192, elapsed: 7.033 seconds]
Computing values for grid cells...
... done. [user: 0.180, system: 0.005, elapsed: 0.360 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.740, system: 0.348, elapsed: 29.835 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.593, system: 0.030, elapsed: 2.969 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.443, system: 0.056, elapsed: 16.319 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.194, system: 0.011, elapsed: 0.307 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.875, system: 0.173, elapsed: 6.087 seconds]
Computing values for grid cells...
... done. [user: 0.168, system: 0.004, elapsed: 0.233 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.835, system: 0.303, elapsed: 26.927 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.577, system: 0.030, elapsed: 2.446 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.840, system: 0.250, elapsed: 16.969 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.203, system: 0.018, elapsed: 0.380 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.944, system: 0.278, elapsed: 5.980 seconds]
Computing values for grid cells...
... done. [user: 0.182, system: 0.011, elapsed: 0.269 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.144, system: 0.272, elapsed: 1.070 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.552, system: 0.894, elapsed: 28.191 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.700, system: 0.056, elapsed: 3.266 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.570, system: 0.136, elapsed: 20.338 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.197, system: 0.012, elapsed: 0.302 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.773, system: 0.180, elapsed: 6.070 seconds]
Computing values for grid cells...
... done. [user: 0.167, system: 0.002, elapsed: 0.294 seconds]
Starting 50 permutations...
... serially ...
|
| | 0%
|
|== | 2%
|
|=== | 4%
|
|===== | 6%
|
|====== | 8%
|
|======== | 10%
|
|========== | 12%
|
|=========== | 14%
|
|============= | 16%
|
|============== | 18%
|
|================ | 20%
|
|================== | 22%
|
|=================== | 24%
|
|===================== | 26%
|
|====================== | 28%
|
|======================== | 30%
|
|========================== | 32%
|
|=========================== | 34%
|
|============================= | 36%
|
|============================== | 38%
|
|================================ | 40%
|
|================================== | 42%
|
|=================================== | 44%
|
|===================================== | 46%
|
|====================================== | 48%
|
|======================================== | 50%
|
|========================================== | 52%
|
|=========================================== | 54%
|
|============================================= | 56%
|
|============================================== | 58%
|
|================================================ | 60%
|
|================================================== | 62%
|
|=================================================== | 64%
|
|===================================================== | 66%
|
|====================================================== | 68%
|
|======================================================== | 70%
|
|========================================================== | 72%
|
|=========================================================== | 74%
|
|============================================================= | 76%
|
|============================================================== | 78%
|
|================================================================ | 80%
|
|================================================================== | 82%
|
|=================================================================== | 84%
|
|===================================================================== | 86%
|
|====================================================================== | 88%
|
|======================================================================== | 90%
|
|========================================================================== | 92%
|
|=========================================================================== | 94%
|
|============================================================================= | 96%
|
|============================================================================== | 98%
|
|================================================================================| 100%
... computing probabilities from permuted values ...
... done. [user: 10.781, system: 0.488, elapsed: 20.667 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 26.856, system: 0.903, elapsed: 52.037 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64