CRAN Package Check Results for Package metR

Last updated on 2025-05-14 02:50:18 CEST.

Flavor	Version	T_install	T_check	T_total	Status
r-devel-linux-x86_64-debian-clang	0.18.0	16.26	227.31	243.57	ERROR
r-devel-linux-x86_64-debian-gcc	0.18.1	11.02	184.55	195.57	OK
r-devel-linux-x86_64-fedora-clang	0.18.1			468.86	OK
r-devel-linux-x86_64-fedora-gcc	0.18.1			470.68	OK
r-devel-windows-x86_64	0.18.0	18.00	287.00	305.00	OK
r-patched-linux-x86_64	0.18.0	16.74	214.15	230.89	ERROR
r-release-linux-x86_64	0.18.0	14.44	214.73	229.17	ERROR
r-release-macos-arm64	0.18.1			137.00	OK
r-release-macos-x86_64	0.18.1			255.00	ERROR
r-release-windows-x86_64	0.18.1	13.00	277.00	290.00	OK
r-oldrel-macos-arm64	0.18.1			134.00	OK
r-oldrel-macos-x86_64	0.18.1			346.00	OK
r-oldrel-windows-x86_64	0.18.0	25.00	377.00	402.00	OK

Additional issues

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Check Details

Version: 0.18.0
Check: examples
Result: ERROR Running examples in ‘metR-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: ReadNetCDF > ### Title: Read NetCDF files. > ### Aliases: ReadNetCDF GlanceNetCDF > > ### ** Examples > > file <- system.file("extdata", "temperature.nc", package = "metR") > # Get a list of variables. > variables <- GlanceNetCDF(file) Error in check_packages(c("ncdf4", "PCICt"), "ReadNetCDF") : ReadNetCDF needs packages PCICt. Install them with: 'install.packages(c("PCICt"))'. Calls: GlanceNetCDF -> ReadNetCDF -> check_packages -> stopf Execution halted Examples with CPU (user + system) or elapsed time > 5s user system elapsed EOF 4.772 0.174 6.548 Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.18.0
Check: tests
Result: ERROR Running ‘testthat.R’ [53s/48s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(metR) > # library(vdiffr) > > on_cran <- !isTRUE(as.logical(Sys.getenv("NOT_CRAN", "false"))) > if (on_cran) data.table::setDTthreads(2) > > test_check("metR") [ FAIL 10 | WARN 1 | SKIP 20 | PASS 166 ] ══ Skipped tests (20) ══════════════════════════════════════════════════════════ • On CRAN (20): 'test-GetTopography.R:3:5', 'test-ReadNetCDF.R:66:5', 'test-vis-arrow.R:10:5', 'test-vis-arrow.R:36:5', 'test-vis-contour2.R:10:5', 'test-vis-contour2.R:24:5', 'test-vis-contour2.R:35:5', 'test-vis-contour2.R:52:5', 'test-vis-contour2.R:71:5', 'test-vis-contour_fill.R:10:5', 'test-vis-contour_fill.R:24:5', 'test-vis-contour_fill.R:40:5', 'test-vis-discretised-scale.R:13:5', 'test-vis-geom-relief.R:9:5', 'test-vis-guide_colorstrip.R:13:5', 'test-vis-streamline.R:22:5', 'test-vis-streamline.R:28:5', 'test-vis-text-contour.R:11:5', 'test-vis-text-contour.R:67:5', 'test-vis-text-contour.R:78:5' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-ReadNetCDF.R:6:5'): returns a data.table ─────────────────────── Error in `check_packages(c("ncdf4", "PCICt"), "ReadNetCDF")`: ReadNetCDF needs packages PCICt. Install them with: 'install.packages(c("PCICt"))'. Backtrace: ▆ 1. ├─testthat::expect_s3_class(ReadNetCDF(file), "data.table") at test-ReadNetCDF.R:6:5 2. │ └─testthat::quasi_label(enquo(object), arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. └─metR::ReadNetCDF(file) 5. └─metR:::check_packages(c("ncdf4", "PCICt"), "ReadNetCDF") 6. └─metR:::stopf(...) ── Error ('test-ReadNetCDF.R:11:5'): GlanceNetCDF prints nicely ──────────────── Error in `check_packages(c("ncdf4", "PCICt"), "ReadNetCDF")`: ReadNetCDF needs packages PCICt. Install them with: 'install.packages(c("PCICt"))'. Backtrace: ▆ 1. ├─testthat::expect_known_output(print(GlanceNetCDF(file)), "GlanceNetCDF") at test-ReadNetCDF.R:11:5 2. │ ├─base::append(act, eval_with_output(object, print = print, width = width)) 3. │ └─testthat:::eval_with_output(object, print = print, width = width) 4. │ ├─withr::with_output_sink(path, withVisible(code)) 5. │ │ └─base::force(code) 6. │ └─base::withVisible(code) 7. ├─base::print(GlanceNetCDF(file)) 8. └─metR::GlanceNetCDF(file) 9. └─metR::ReadNetCDF(file, out = "vars") 10. └─metR:::check_packages(c("ncdf4", "PCICt"), "ReadNetCDF") 11. └─metR:::stopf(...) ── Error ('test-ReadNetCDF.R:16:5'): subsetting works ────────────────────────── Error in `check_packages(c("ncdf4", "PCICt"), "ReadNetCDF")`: ReadNetCDF needs packages PCICt. Install them with: 'install.packages(c("PCICt"))'. Backtrace: ▆ 1. └─metR::ReadNetCDF(file, subset = list(lat = -90:20)) at test-ReadNetCDF.R:16:5 2. └─metR:::check_packages(c("ncdf4", "PCICt"), "ReadNetCDF") 3. └─metR:::stopf(...) ── Error ('test-ReadNetCDF.R:32:9'): naming works ────────────────────────────── Error in `check_packages(c("ncdf4", "PCICt"), "ReadNetCDF")`: ReadNetCDF needs packages PCICt. Install them with: 'install.packages(c("PCICt"))'. Backtrace: ▆ 1. ├─testthat::expect_true(...) at test-ReadNetCDF.R:31:5 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. └─metR::ReadNetCDF(file, vars = c(air2 = "air")) at test-ReadNetCDF.R:32:9 5. └─metR:::check_packages(c("ncdf4", "PCICt"), "ReadNetCDF") 6. └─metR:::stopf(...) ── Error ('test-ReadNetCDF.R:38:5'): different outs work ─────────────────────── Error in `check_packages(c("ncdf4", "PCICt"), "ReadNetCDF")`: ReadNetCDF needs packages PCICt. Install them with: 'install.packages(c("PCICt"))'. Backtrace: ▆ 1. ├─testthat::expect_s3_class(ReadNetCDF(file), "data.table") at test-ReadNetCDF.R:38:5 2. │ └─testthat::quasi_label(enquo(object), arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. └─metR::ReadNetCDF(file) 5. └─metR:::check_packages(c("ncdf4", "PCICt"), "ReadNetCDF") 6. └─metR:::stopf(...) ── Error ('test-ReadNetCDF.R:47:5'): time dimension without 'since' works ────── Error in `check_packages(c("ncdf4", "PCICt"), "ReadNetCDF")`: ReadNetCDF needs packages PCICt. Install them with: 'install.packages(c("PCICt"))'. Backtrace: ▆ 1. └─metR::ReadNetCDF(file) at test-ReadNetCDF.R:47:5 2. └─metR:::check_packages(c("ncdf4", "PCICt"), "ReadNetCDF") 3. └─metR:::stopf(...) ── Error ('test-ReadNetCDF.R:53:5'): can parse calendar correcly ─────────────── Error in `check_packages(c("ncdf4", "PCICt"), "ReadNetCDF")`: ReadNetCDF needs packages PCICt. Install them with: 'install.packages(c("PCICt"))'. Backtrace: ▆ 1. └─metR::ReadNetCDF(file, vars = "zg") at test-ReadNetCDF.R:53:5 2. └─metR:::check_packages(c("ncdf4", "PCICt"), "ReadNetCDF") 3. └─metR:::stopf(...) ── Failure ('test-ReadNetCDF.R:60:5'): can read from nc_open ─────────────────── `ReadNetCDF(nc)` threw an error. Message: ReadNetCDF needs packages PCICt. Install them with: 'install.packages(c("PCICt"))'. Class: simpleError/error/condition Backtrace: ▆ 1. ├─testthat::expect_error(ReadNetCDF(nc), NA) at test-ReadNetCDF.R:60:5 2. │ └─testthat:::quasi_capture(...) 3. │ ├─testthat (local) .capture(...) 4. │ │ └─base::withCallingHandlers(...) 5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 6. └─metR::ReadNetCDF(nc) 7. └─metR:::check_packages(c("ncdf4", "PCICt"), "ReadNetCDF") 8. └─metR:::stopf(...) ── Error ('test-ReadNetCDF.R:76:5'): can read variables with no dimension ────── Error in `check_packages(c("ncdf4", "PCICt"), "ReadNetCDF")`: ReadNetCDF needs packages PCICt. Install them with: 'install.packages(c("PCICt"))'. Backtrace: ▆ 1. ├─testthat::expect_equal(ReadNetCDF(file, "projection"), 1) at test-ReadNetCDF.R:76:5 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. └─metR::ReadNetCDF(file, "projection") 5. └─metR:::check_packages(c("ncdf4", "PCICt"), "ReadNetCDF") 6. └─metR:::stopf(...) ── Error ('test-ReadNetCDF.R:82:5'): function in vars works ──────────────────── Error in `check_packages(c("ncdf4", "PCICt"), "ReadNetCDF")`: ReadNetCDF needs packages PCICt. Install them with: 'install.packages(c("PCICt"))'. Backtrace: ▆ 1. └─metR::ReadNetCDF(file, vars = "o3_conc") at test-ReadNetCDF.R:82:5 2. └─metR:::check_packages(c("ncdf4", "PCICt"), "ReadNetCDF") 3. └─metR:::stopf(...) [ FAIL 10 | WARN 1 | SKIP 20 | PASS 166 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.18.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘Visualization-tools.Rmd’ using knitr --- finished re-building ‘Visualization-tools.Rmd’ --- re-building ‘Working-with-data.Rmd’ using knitr Quitting from Working-with-data.Rmd:33-42 [unnamed-chunk-1] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `check_packages()`: ! ReadNetCDF needs packages PCICt. Install them with: 'install.packages(c("PCICt"))'. --- Backtrace: ▆ 1. └─metR::GlanceNetCDF(file) 2. └─metR::ReadNetCDF(file, out = "vars") 3. └─metR:::check_packages(c("ncdf4", "PCICt"), "ReadNetCDF") 4. └─metR:::stopf(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Working-with-data.Rmd' failed with diagnostics: ReadNetCDF needs packages PCICt. Install them with: 'install.packages(c("PCICt"))'. --- failed re-building ‘Working-with-data.Rmd’ SUMMARY: processing the following file failed: ‘Working-with-data.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-devel-linux-x86_64-debian-clang, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.18.0
Check: tests
Result: ERROR Running ‘testthat.R’ [53s/68s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(metR) > # library(vdiffr) > > on_cran <- !isTRUE(as.logical(Sys.getenv("NOT_CRAN", "false"))) > if (on_cran) data.table::setDTthreads(2) > > test_check("metR") [ FAIL 10 | WARN 1 | SKIP 20 | PASS 166 ] ══ Skipped tests (20) ══════════════════════════════════════════════════════════ • On CRAN (20): 'test-GetTopography.R:3:5', 'test-ReadNetCDF.R:66:5', 'test-vis-arrow.R:10:5', 'test-vis-arrow.R:36:5', 'test-vis-contour2.R:10:5', 'test-vis-contour2.R:24:5', 'test-vis-contour2.R:35:5', 'test-vis-contour2.R:52:5', 'test-vis-contour2.R:71:5', 'test-vis-contour_fill.R:10:5', 'test-vis-contour_fill.R:24:5', 'test-vis-contour_fill.R:40:5', 'test-vis-discretised-scale.R:13:5', 'test-vis-geom-relief.R:9:5', 'test-vis-guide_colorstrip.R:13:5', 'test-vis-streamline.R:22:5', 'test-vis-streamline.R:28:5', 'test-vis-text-contour.R:11:5', 'test-vis-text-contour.R:67:5', 'test-vis-text-contour.R:78:5' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-ReadNetCDF.R:6:5'): returns a data.table ─────────────────────── Error in `check_packages(c("ncdf4", "PCICt"), "ReadNetCDF")`: ReadNetCDF needs packages PCICt. Install them with: 'install.packages(c("PCICt"))'. Backtrace: ▆ 1. ├─testthat::expect_s3_class(ReadNetCDF(file), "data.table") at test-ReadNetCDF.R:6:5 2. │ └─testthat::quasi_label(enquo(object), arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. └─metR::ReadNetCDF(file) 5. └─metR:::check_packages(c("ncdf4", "PCICt"), "ReadNetCDF") 6. └─metR:::stopf(...) ── Error ('test-ReadNetCDF.R:11:5'): GlanceNetCDF prints nicely ──────────────── Error in `check_packages(c("ncdf4", "PCICt"), "ReadNetCDF")`: ReadNetCDF needs packages PCICt. Install them with: 'install.packages(c("PCICt"))'. Backtrace: ▆ 1. ├─testthat::expect_known_output(print(GlanceNetCDF(file)), "GlanceNetCDF") at test-ReadNetCDF.R:11:5 2. │ ├─base::append(act, eval_with_output(object, print = print, width = width)) 3. │ └─testthat:::eval_with_output(object, print = print, width = width) 4. │ ├─withr::with_output_sink(path, withVisible(code)) 5. │ │ └─base::force(code) 6. │ └─base::withVisible(code) 7. ├─base::print(GlanceNetCDF(file)) 8. └─metR::GlanceNetCDF(file) 9. └─metR::ReadNetCDF(file, out = "vars") 10. └─metR:::check_packages(c("ncdf4", "PCICt"), "ReadNetCDF") 11. └─metR:::stopf(...) ── Error ('test-ReadNetCDF.R:16:5'): subsetting works ────────────────────────── Error in `check_packages(c("ncdf4", "PCICt"), "ReadNetCDF")`: ReadNetCDF needs packages PCICt. Install them with: 'install.packages(c("PCICt"))'. Backtrace: ▆ 1. └─metR::ReadNetCDF(file, subset = list(lat = -90:20)) at test-ReadNetCDF.R:16:5 2. └─metR:::check_packages(c("ncdf4", "PCICt"), "ReadNetCDF") 3. └─metR:::stopf(...) ── Error ('test-ReadNetCDF.R:32:9'): naming works ────────────────────────────── Error in `check_packages(c("ncdf4", "PCICt"), "ReadNetCDF")`: ReadNetCDF needs packages PCICt. Install them with: 'install.packages(c("PCICt"))'. Backtrace: ▆ 1. ├─testthat::expect_true(...) at test-ReadNetCDF.R:31:5 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. └─metR::ReadNetCDF(file, vars = c(air2 = "air")) at test-ReadNetCDF.R:32:9 5. └─metR:::check_packages(c("ncdf4", "PCICt"), "ReadNetCDF") 6. └─metR:::stopf(...) ── Error ('test-ReadNetCDF.R:38:5'): different outs work ─────────────────────── Error in `check_packages(c("ncdf4", "PCICt"), "ReadNetCDF")`: ReadNetCDF needs packages PCICt. Install them with: 'install.packages(c("PCICt"))'. Backtrace: ▆ 1. ├─testthat::expect_s3_class(ReadNetCDF(file), "data.table") at test-ReadNetCDF.R:38:5 2. │ └─testthat::quasi_label(enquo(object), arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. └─metR::ReadNetCDF(file) 5. └─metR:::check_packages(c("ncdf4", "PCICt"), "ReadNetCDF") 6. └─metR:::stopf(...) ── Error ('test-ReadNetCDF.R:47:5'): time dimension without 'since' works ────── Error in `check_packages(c("ncdf4", "PCICt"), "ReadNetCDF")`: ReadNetCDF needs packages PCICt. Install them with: 'install.packages(c("PCICt"))'. Backtrace: ▆ 1. └─metR::ReadNetCDF(file) at test-ReadNetCDF.R:47:5 2. └─metR:::check_packages(c("ncdf4", "PCICt"), "ReadNetCDF") 3. └─metR:::stopf(...) ── Error ('test-ReadNetCDF.R:53:5'): can parse calendar correcly ─────────────── Error in `check_packages(c("ncdf4", "PCICt"), "ReadNetCDF")`: ReadNetCDF needs packages PCICt. Install them with: 'install.packages(c("PCICt"))'. Backtrace: ▆ 1. └─metR::ReadNetCDF(file, vars = "zg") at test-ReadNetCDF.R:53:5 2. └─metR:::check_packages(c("ncdf4", "PCICt"), "ReadNetCDF") 3. └─metR:::stopf(...) ── Failure ('test-ReadNetCDF.R:60:5'): can read from nc_open ─────────────────── `ReadNetCDF(nc)` threw an error. Message: ReadNetCDF needs packages PCICt. Install them with: 'install.packages(c("PCICt"))'. Class: simpleError/error/condition Backtrace: ▆ 1. ├─testthat::expect_error(ReadNetCDF(nc), NA) at test-ReadNetCDF.R:60:5 2. │ └─testthat:::quasi_capture(...) 3. │ ├─testthat (local) .capture(...) 4. │ │ └─base::withCallingHandlers(...) 5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 6. └─metR::ReadNetCDF(nc) 7. └─metR:::check_packages(c("ncdf4", "PCICt"), "ReadNetCDF") 8. └─metR:::stopf(...) ── Error ('test-ReadNetCDF.R:76:5'): can read variables with no dimension ────── Error in `check_packages(c("ncdf4", "PCICt"), "ReadNetCDF")`: ReadNetCDF needs packages PCICt. Install them with: 'install.packages(c("PCICt"))'. Backtrace: ▆ 1. ├─testthat::expect_equal(ReadNetCDF(file, "projection"), 1) at test-ReadNetCDF.R:76:5 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. └─metR::ReadNetCDF(file, "projection") 5. └─metR:::check_packages(c("ncdf4", "PCICt"), "ReadNetCDF") 6. └─metR:::stopf(...) ── Error ('test-ReadNetCDF.R:82:5'): function in vars works ──────────────────── Error in `check_packages(c("ncdf4", "PCICt"), "ReadNetCDF")`: ReadNetCDF needs packages PCICt. Install them with: 'install.packages(c("PCICt"))'. Backtrace: ▆ 1. └─metR::ReadNetCDF(file, vars = "o3_conc") at test-ReadNetCDF.R:82:5 2. └─metR:::check_packages(c("ncdf4", "PCICt"), "ReadNetCDF") 3. └─metR:::stopf(...) [ FAIL 10 | WARN 1 | SKIP 20 | PASS 166 ] Error: Test failures Execution halted Flavor: r-patched-linux-x86_64

Version: 0.18.0
Check: tests
Result: ERROR Running ‘testthat.R’ [53s/64s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(metR) > # library(vdiffr) > > on_cran <- !isTRUE(as.logical(Sys.getenv("NOT_CRAN", "false"))) > if (on_cran) data.table::setDTthreads(2) > > test_check("metR") [ FAIL 10 | WARN 1 | SKIP 20 | PASS 166 ] ══ Skipped tests (20) ══════════════════════════════════════════════════════════ • On CRAN (20): 'test-GetTopography.R:3:5', 'test-ReadNetCDF.R:66:5', 'test-vis-arrow.R:10:5', 'test-vis-arrow.R:36:5', 'test-vis-contour2.R:10:5', 'test-vis-contour2.R:24:5', 'test-vis-contour2.R:35:5', 'test-vis-contour2.R:52:5', 'test-vis-contour2.R:71:5', 'test-vis-contour_fill.R:10:5', 'test-vis-contour_fill.R:24:5', 'test-vis-contour_fill.R:40:5', 'test-vis-discretised-scale.R:13:5', 'test-vis-geom-relief.R:9:5', 'test-vis-guide_colorstrip.R:13:5', 'test-vis-streamline.R:22:5', 'test-vis-streamline.R:28:5', 'test-vis-text-contour.R:11:5', 'test-vis-text-contour.R:67:5', 'test-vis-text-contour.R:78:5' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-ReadNetCDF.R:6:5'): returns a data.table ─────────────────────── Error in `check_packages(c("ncdf4", "PCICt"), "ReadNetCDF")`: ReadNetCDF needs packages PCICt. Install them with: 'install.packages(c("PCICt"))'. Backtrace: ▆ 1. ├─testthat::expect_s3_class(ReadNetCDF(file), "data.table") at test-ReadNetCDF.R:6:5 2. │ └─testthat::quasi_label(enquo(object), arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. └─metR::ReadNetCDF(file) 5. └─metR:::check_packages(c("ncdf4", "PCICt"), "ReadNetCDF") 6. └─metR:::stopf(...) ── Error ('test-ReadNetCDF.R:11:5'): GlanceNetCDF prints nicely ──────────────── Error in `check_packages(c("ncdf4", "PCICt"), "ReadNetCDF")`: ReadNetCDF needs packages PCICt. Install them with: 'install.packages(c("PCICt"))'. Backtrace: ▆ 1. ├─testthat::expect_known_output(print(GlanceNetCDF(file)), "GlanceNetCDF") at test-ReadNetCDF.R:11:5 2. │ ├─base::append(act, eval_with_output(object, print = print, width = width)) 3. │ └─testthat:::eval_with_output(object, print = print, width = width) 4. │ ├─withr::with_output_sink(path, withVisible(code)) 5. │ │ └─base::force(code) 6. │ └─base::withVisible(code) 7. ├─base::print(GlanceNetCDF(file)) 8. └─metR::GlanceNetCDF(file) 9. └─metR::ReadNetCDF(file, out = "vars") 10. └─metR:::check_packages(c("ncdf4", "PCICt"), "ReadNetCDF") 11. └─metR:::stopf(...) ── Error ('test-ReadNetCDF.R:16:5'): subsetting works ────────────────────────── Error in `check_packages(c("ncdf4", "PCICt"), "ReadNetCDF")`: ReadNetCDF needs packages PCICt. Install them with: 'install.packages(c("PCICt"))'. Backtrace: ▆ 1. └─metR::ReadNetCDF(file, subset = list(lat = -90:20)) at test-ReadNetCDF.R:16:5 2. └─metR:::check_packages(c("ncdf4", "PCICt"), "ReadNetCDF") 3. └─metR:::stopf(...) ── Error ('test-ReadNetCDF.R:32:9'): naming works ────────────────────────────── Error in `check_packages(c("ncdf4", "PCICt"), "ReadNetCDF")`: ReadNetCDF needs packages PCICt. Install them with: 'install.packages(c("PCICt"))'. Backtrace: ▆ 1. ├─testthat::expect_true(...) at test-ReadNetCDF.R:31:5 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. └─metR::ReadNetCDF(file, vars = c(air2 = "air")) at test-ReadNetCDF.R:32:9 5. └─metR:::check_packages(c("ncdf4", "PCICt"), "ReadNetCDF") 6. └─metR:::stopf(...) ── Error ('test-ReadNetCDF.R:38:5'): different outs work ─────────────────────── Error in `check_packages(c("ncdf4", "PCICt"), "ReadNetCDF")`: ReadNetCDF needs packages PCICt. Install them with: 'install.packages(c("PCICt"))'. Backtrace: ▆ 1. ├─testthat::expect_s3_class(ReadNetCDF(file), "data.table") at test-ReadNetCDF.R:38:5 2. │ └─testthat::quasi_label(enquo(object), arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. └─metR::ReadNetCDF(file) 5. └─metR:::check_packages(c("ncdf4", "PCICt"), "ReadNetCDF") 6. └─metR:::stopf(...) ── Error ('test-ReadNetCDF.R:47:5'): time dimension without 'since' works ────── Error in `check_packages(c("ncdf4", "PCICt"), "ReadNetCDF")`: ReadNetCDF needs packages PCICt. Install them with: 'install.packages(c("PCICt"))'. Backtrace: ▆ 1. └─metR::ReadNetCDF(file) at test-ReadNetCDF.R:47:5 2. └─metR:::check_packages(c("ncdf4", "PCICt"), "ReadNetCDF") 3. └─metR:::stopf(...) ── Error ('test-ReadNetCDF.R:53:5'): can parse calendar correcly ─────────────── Error in `check_packages(c("ncdf4", "PCICt"), "ReadNetCDF")`: ReadNetCDF needs packages PCICt. Install them with: 'install.packages(c("PCICt"))'. Backtrace: ▆ 1. └─metR::ReadNetCDF(file, vars = "zg") at test-ReadNetCDF.R:53:5 2. └─metR:::check_packages(c("ncdf4", "PCICt"), "ReadNetCDF") 3. └─metR:::stopf(...) ── Failure ('test-ReadNetCDF.R:60:5'): can read from nc_open ─────────────────── `ReadNetCDF(nc)` threw an error. Message: ReadNetCDF needs packages PCICt. Install them with: 'install.packages(c("PCICt"))'. Class: simpleError/error/condition Backtrace: ▆ 1. ├─testthat::expect_error(ReadNetCDF(nc), NA) at test-ReadNetCDF.R:60:5 2. │ └─testthat:::quasi_capture(...) 3. │ ├─testthat (local) .capture(...) 4. │ │ └─base::withCallingHandlers(...) 5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 6. └─metR::ReadNetCDF(nc) 7. └─metR:::check_packages(c("ncdf4", "PCICt"), "ReadNetCDF") 8. └─metR:::stopf(...) ── Error ('test-ReadNetCDF.R:76:5'): can read variables with no dimension ────── Error in `check_packages(c("ncdf4", "PCICt"), "ReadNetCDF")`: ReadNetCDF needs packages PCICt. Install them with: 'install.packages(c("PCICt"))'. Backtrace: ▆ 1. ├─testthat::expect_equal(ReadNetCDF(file, "projection"), 1) at test-ReadNetCDF.R:76:5 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. └─metR::ReadNetCDF(file, "projection") 5. └─metR:::check_packages(c("ncdf4", "PCICt"), "ReadNetCDF") 6. └─metR:::stopf(...) ── Error ('test-ReadNetCDF.R:82:5'): function in vars works ──────────────────── Error in `check_packages(c("ncdf4", "PCICt"), "ReadNetCDF")`: ReadNetCDF needs packages PCICt. Install them with: 'install.packages(c("PCICt"))'. Backtrace: ▆ 1. └─metR::ReadNetCDF(file, vars = "o3_conc") at test-ReadNetCDF.R:82:5 2. └─metR:::check_packages(c("ncdf4", "PCICt"), "ReadNetCDF") 3. └─metR:::stopf(...) [ FAIL 10 | WARN 1 | SKIP 20 | PASS 166 ] Error: Test failures Execution halted Flavor: r-release-linux-x86_64

Version: 0.18.1
Check: examples
Result: ERROR Running examples in ‘metR-Ex.R’ failed The error most likely occurred in: > ### Name: MaskLand > ### Title: Mask > ### Aliases: MaskLand > > ### ** Examples > > ## Don't show: > if ( requireNamespace("maps")) (if (getRversion() >= "3.4") withAutoprint else force)({ # examplesIf + ## End(Don't show) + # Make a sea-land mask + mask <- temperature[lev == 1000, .(lon = lon, lat = lat, land = MaskLand(lon, lat))] + temperature <- temperature[mask, on = c("lon", "lat")] + library(ggplot2) + + ggplot(mask, aes(lon, lat)) + + geom_raster(aes(fill = land)) + + # Take the temperature difference between land and ocean + diftemp <- temperature[, + .(tempdif = mean(air[land == TRUE]) - mean(air[land == FALSE])), + by = .(lat, lev)] + + ggplot(diftemp, aes(lat, lev)) + + geom_contour(aes(z = tempdif, color = after_stat(level))) + + scale_y_level() + + scale_x_latitude() + + scale_color_divergent() + ## Don't show: + }) # examplesIf > mask <- temperature[lev == 1000, .(lon = lon, lat = lat, land = MaskLand(lon, + lat))] Error in loadNamespace(x) : there is no package called ‘s2’ Calls: <Anonymous> ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted Flavor: r-release-macos-x86_64

Version: 0.18.1
Check: tests
Result: ERROR Running ‘testthat.R’ [19s/19s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(metR) > # library(vdiffr) > > on_cran <- !isTRUE(as.logical(Sys.getenv("NOT_CRAN", "false"))) > if (on_cran) data.table::setDTthreads(2) > > test_check("metR") [ FAIL 3 | WARN 1 | SKIP 20 | PASS 177 ] ══ Skipped tests (20) ══════════════════════════════════════════════════════════ • On CRAN (20): 'test-GetTopography.R:3:5', 'test-ReadNetCDF.R:66:5', 'test-vis-arrow.R:13:5', 'test-vis-arrow.R:39:5', 'test-vis-contour2.R:11:5', 'test-vis-contour2.R:25:5', 'test-vis-contour2.R:36:5', 'test-vis-contour2.R:53:5', 'test-vis-contour2.R:72:5', 'test-vis-contour_fill.R:13:5', 'test-vis-contour_fill.R:27:5', 'test-vis-contour_fill.R:43:5', 'test-vis-discretised-scale.R:15:5', 'test-vis-geom-relief.R:11:5', 'test-vis-guide_colorstrip.R:14:5', 'test-vis-streamline.R:23:5', 'test-vis-streamline.R:29:5', 'test-vis-text-contour.R:13:5', 'test-vis-text-contour.R:69:5', 'test-vis-text-contour.R:80:5' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('tests.R:22:5'): Water is still water ──────────────────────────────── <packageNotFoundError/error/condition> Error in `loadNamespace(x)`: there is no package called 's2' Backtrace: ▆ 1. ├─testthat::expect_equal(MaskLand(120, 14), FALSE) at tests.R:22:5 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─metR::MaskLand(120, 14) 5. │ ├─sf::st_make_valid(seamask) 6. │ └─sf:::st_make_valid.sf(seamask) 7. │ ├─sf::st_set_geometry(x, st_make_valid(st_geometry(x), ...)) 8. │ ├─sf::st_make_valid(st_geometry(x), ...) 9. │ └─sf:::st_make_valid.sfc(st_geometry(x), ...) 10. └─base::loadNamespace(x) 11. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 12. └─base (local) withOneRestart(expr, restarts[[1L]]) 13. └─base (local) doWithOneRestart(return(expr), restart) ── Error ('tests.R:30:5'): MaskLand respects boundaries ──────────────────────── <packageNotFoundError/error/condition> Error in `loadNamespace(x)`: there is no package called 's2' Backtrace: ▆ 1. ├─testthat::expect_equal(MaskLand(361, 15), MaskLand(1, 15)) at tests.R:30:5 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─metR::MaskLand(361, 15) 5. │ ├─sf::st_make_valid(seamask) 6. │ └─sf:::st_make_valid.sf(seamask) 7. │ ├─sf::st_set_geometry(x, st_make_valid(st_geometry(x), ...)) 8. │ ├─sf::st_make_valid(st_geometry(x), ...) 9. │ └─sf:::st_make_valid.sfc(st_geometry(x), ...) 10. └─base::loadNamespace(x) 11. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 12. └─base (local) withOneRestart(expr, restarts[[1L]]) 13. └─base (local) doWithOneRestart(return(expr), restart) ── Error ('tests.R:37:5'): MaskLand respects order ───────────────────────────── <packageNotFoundError/error/condition> Error in `loadNamespace(x)`: there is no package called 's2' Backtrace: ▆ 1. ├─testthat::expect_equal(...) at tests.R:37:5 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─metR::MaskLand(c(120, 360 - 58), c(14, -34)) 5. │ ├─sf::st_make_valid(seamask) 6. │ └─sf:::st_make_valid.sf(seamask) 7. │ ├─sf::st_set_geometry(x, st_make_valid(st_geometry(x), ...)) 8. │ ├─sf::st_make_valid(st_geometry(x), ...) 9. │ └─sf:::st_make_valid.sfc(st_geometry(x), ...) 10. └─base::loadNamespace(x) 11. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 12. └─base (local) withOneRestart(expr, restarts[[1L]]) 13. └─base (local) doWithOneRestart(return(expr), restart) [ FAIL 3 | WARN 1 | SKIP 20 | PASS 177 ] Error: Test failures Execution halted Flavor: r-release-macos-x86_64

Version: 0.18.1
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘Visualization-tools.Rmd’ using knitr --- finished re-building ‘Visualization-tools.Rmd’ --- re-building ‘Working-with-data.Rmd’ using knitr Quitting from Working-with-data.Rmd:93-99 [unnamed-chunk-5] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `loadNamespace()`: ! there is no package called 's2' --- Backtrace: ▆ 1. ├─air[, `:=`(land, MaskLand(lon, lat))] 2. ├─data.table:::`[.data.table`(air, , `:=`(land, MaskLand(lon, lat))) 3. │ └─base::eval(jsub, SDenv, parent.frame()) 4. │ └─base::eval(jsub, SDenv, parent.frame()) 5. │ └─metR::MaskLand(lon, lat) 6. │ ├─sf::st_make_valid(seamask) 7. │ └─sf:::st_make_valid.sf(seamask) 8. │ ├─sf::st_set_geometry(x, st_make_valid(st_geometry(x), ...)) 9. │ ├─sf::st_make_valid(st_geometry(x), ...) 10. │ └─sf:::st_make_valid.sfc(st_geometry(x), ...) 11. └─base::loadNamespace(x) 12. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 13. └─base (local) withOneRestart(expr, restarts[[1L]]) 14. └─base (local) doWithOneRestart(return(expr), restart) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Working-with-data.Rmd' failed with diagnostics: there is no package called 's2' --- failed re-building ‘Working-with-data.Rmd’ SUMMARY: processing the following file failed: ‘Working-with-data.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-release-macos-x86_64